Serinus canaria (common canary): 103813677
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Entry
103813677 CDS
T05755
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
scan
Serinus canaria (common canary)
Pathway
scan03015
mRNA surveillance pathway
scan03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103813677 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103813677 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103813677 (CPSF6)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
103813677 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
103813677
NCBI-ProteinID:
XP_030093594
LinkDB
All DBs
Position
Unknown
AA seq
583 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggcgaggagttcaaccag
gaggctgaatatggtgggcatgatcaaattgatttatatgatgatgtaatttctccatct
gcaaataatggagatgctccagaggatcgcgattacatggattctcttccgccatctgtt
ggggatgatgtaggtaaaggagctgcaccaaatgttgtctatacatatactggaaagaga
attgccttgtacattggaaatctcacttggtggacaacagatgaagacttaactgaagca
gttcattcactgggggtaaatgacattttggagataaaattttttgaaaatcgtgctaat
ggccagtctaaagggtttgcccttgtgggtgtgggatcggaagcatcctccaaaaagctg
atggatttgttgcctaaaagagaattgcatgggcagaatcctgttgtaactccgtgtaat
aaacagtttctgagtcaatttgaaatgcagtcaaggaaaaccacacagtctggtcagatg
tctggggaaggtaaagctggtcccccaggaggaagctcacgagcagcatttccacctagc
aacagaggtcggggccgttttccaggtgccattccaggtggagacagattccctggacca
gcagggccaggagggccaccaccacctttcccagctggacaaactcccccacgtccaccc
ttaggtcctcctggcccaccaggcccaccaggccctccaccacctggtcaggtcctccca
cctccattagctggacctcctaatcgtggtgatcgtccaccaccaccagttctgtttcca
ggacagccttttggtcagcctccacttgggccacttcctccaggccctccaccaccagtt
ccaggctatgggccaccaccaggtccaccaccacctcagcagggtccacctccacctccg
ggtccatttccccctcgtccacctggccctctagggccacccctgactcttgctcctcct
ccacatctccctgggccaccgccaggtgctccaccaccggcaccacatgtgaatccagct
ttcttccccccacctgccaatagtggcatacccacttcagacagccgtggcccacctccg
acagatccgtatggccgacctccaccgtatgacagaggtgactatgggccacctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcgaggacaccttta
agtgaagcagaatttgaagaaatcatgaatagaaatagggcaatctcaagcagtgccatt
tcaagagctgtatcagatgccagtgctggggactatggaagtgctatagagaccttggta
actgcgatttccttaatcaaacagtccaaagtatctgcagatgatcgctgcaaagtactc
attagctctcttcaggactgccttcatggaattgagtctaagtcttatggttctggatcc
agaagacgtgagcgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgg
cacaaatcacgtagtagagaccgtcacgatgactattaccgggaaaggagccgtgagaga
gagaggcaccgcgatcgtgacagagatcgggacagagaacgagacagagagagagaatat
cgtcaccgttaa
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