Serinus canaria (common canary): 103814392
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Entry
103814392 CDS
T05755
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
scan
Serinus canaria (common canary)
Pathway
scan04622
RIG-I-like receptor signaling pathway
scan05164
Influenza A
scan05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103814392 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
103814392 (IFIH1)
05168 Herpes simplex virus 1 infection
103814392 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
scan04054
]
103814392 (IFIH1)
Enzymes [BR:
scan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103814392 (IFIH1)
Pattern recognition receptors [BR:
scan04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
103814392 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SWI2_SNF2
DUF3638
Motif
Other DBs
NCBI-GeneID:
103814392
NCBI-ProteinID:
XP_018767017
LinkDB
All DBs
Position
Unknown
AA seq
1006 aa
AA seq
DB search
MAEGTRDERFLYMISCFRPRLKQFIQVQPVLDRLPSLSAEDKDRVRAAALQGGAAAGAEE
LLRAVERGPRGCGWIREFLQALEHGGCSLAVCYANPSLSQLPSPEEEAEHDLCVHLVQLL
HGTLVDRMRTVQVAEKCLQMGIFQDEDVDRIQTVTDNRGNRDGARELLSRIVQKKDWFSS
FLVALRETQHEDLADDLSGNTGENKENGMEQTTNEETEVPSQPGYVTEENLKQEENVDDS
FSSESSLLETSIEKNSVMSESDVSIGDGSVSNLKGNLEESCTTSDSDEDEVERRASPEPD
LTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKKRASEPGKVIVLVNK
VPLVEQHLKREFSPFLKRWYQVIGLSGDSQLKISFPEVVRRNDVIISTAQILENSLLNAS
KEDEESVHLSDFSLIIIDECHHTQKEGVYNNIMRRYLKQKKKNVKLAKENKPLIPQPQIL
GLTASPGVGGATSYSKAEEHILKICANLDACRIMTVEEHASQLKNQVKEPSKKIVIADDK
KRDPFKEKITEIMTEIQNYCQLHPKSEFGTQTYEQWVIREERRAAKEEKRRERVCAEHLK
KYNDALQINDTIRMVDAYNHLNNFYKEEKSKKTVRSDDDDDDEPAVSKQDETDEFLIGLF
HAKKKQLKELTTKPENENEKLTKLRNTLMEEFTKTEEPRGIIFTKTRLSAFALFQWIKEN
PKFEEVGIKAHYLIGSGHKSEMKPMTQNEQREVIDRFRCGNVNLLIATTVAEEGLDIKEC
NIVIRYGLVTNEIAMVQARGRARADESTYALVVSSGSGAVEHENVNIFREKMMYKAIQRV
QKMPQEEYLKKIQSFQSQSIVEKQMKVMRDQRKTYKKNPSLIKFLCKNCSKPICSGEDIQ
VIEDMHHVSVKKDFQSLYHTRENKSLQDKRADYPTNGEIICKDCGQAWGHMMVHRGLDLP
CLKIRNFVVVFADKKSTNNIFKKWGELPIRFPSFDYAAHCPSSDED
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggcagagggcacccgggacgagcggttcctctacatgatctcctgcttcaggccgcgg
ctgaagcagttcatccaggtgcagcccgtgctggaccggctcccctcgctgagcgcggag
gacaaggacagggtgcgtgcggccgccctgcaggggggcgcggcggcgggcgcggaggag
ctgctgcgggccgtggagcgggggccccgcggctgcggctggatccgcgagttcctgcag
gcgctggagcatggaggctgcagcctggccgtctgctacgccaaccccagcctgagccag
ctgccctcgccggaagaggaggccgagcacgacctctgcgtgcacctggtgcagctgctg
cacggcacgctggtggacaggatgcgcaccgtgcaggtggccgagaagtgcctgcagatg
ggaatcttccaggacgaggacgtggatcggatccagactgttactgacaatcgtgggaac
agggatggtgcaagggagctactgagcagaatagtccagaagaaagactggttctcgtct
tttttggttgctctccgtgaaacgcaacatgaagaccttgccgatgatttaagtggaaat
acaggagagaataaagaaaatgggatggagcagactacgaatgaagaaacagaagttcca
agccaaccaggatacgtcacagaggagaatttgaaacaggaagaaaatgtggatgatagt
ttcagcagtgagagcagtctgttggaaacatccatagaaaagaattctgtgatgtcagag
tcagatgtctccataggagatggaagtgtcagtaacttgaagggaaacctggaagagagt
tgcacaaccagtgattcagatgaagatgaagtggagaggagagcctcacctgaaccagat
ctgaccctgagagattaccagatggaagttgcaaagccagccttgaatggggagaatatt
atcatttgtctccctacaggcagtggtaaaaccagagtggctgtttacattaccaaagat
cacttggataagaaaaaaagagcatcagagcctggaaaagtcatagtacttgttaacaag
gttccattggtagaacagcatttaaaaagagagtttagtccattcctgaagcgttggtat
caggttattggtttaagtggtgattctcagctgaaaatctcatttcctgaagttgtgaga
agaaatgatgtcatcataagtacagcacagatccttgagaattcactgttaaatgcgtcc
aaggaagatgaagaaagtgtccacttatcagatttttccctcatcatcatcgatgagtgt
catcacactcaaaaggaaggtgtctacaataatataatgagacgttacttaaaacaaaaa
aagaagaacgtgaagctggcaaaagaaaacaaaccactgatcccacagcctcagattctg
ggacttacagcctcacctggtgtaggaggtgcaacatcctactcaaaagctgaagagcat
attctgaaaatctgtgccaatcttgatgcatgtagaattatgactgttgaagagcatgcc
tcccagctaaagaatcaggtgaaggaaccatctaagaaaattgtgattgcagatgataaa
aaaagggatccatttaaagagaaaattactgagatcatgacagaaatacaaaactattgc
cagctgcatccgaagtctgagtttggaactcagacatatgaacagtgggtgatcagagaa
gagagaagagctgcgaaagaagaaaaacgcagggaacgtgtctgtgcagagcacttgaag
aaatacaacgatgctctccagataaatgacaccatccgaatggtggatgcctacaatcac
ctaaataacttctataaagaggagaaaagtaagaagacagtaaggagtgatgatgatgat
gatgatgaaccagcagtatcaaaacaggatgaaacagatgaatttctaataggtttattt
catgcaaaaaagaaacagctgaaagagttgactacaaagccagaaaatgaaaatgagaag
ctaacgaagttgagaaatactttaatggaggagttcacaaagactgaagagcctcgagga
atcattttcacaaagactcgtctaagtgcctttgctctattccagtggattaaggaaaac
ccaaaatttgaagaagtgggaatcaaggcccattatcttatcggctctggacacaagagt
gaaatgaagcccatgactcagaatgagcaaagggaagttattgatagatttcgatgtgga
aatgtaaatttgctaattgctactactgtagctgaggaaggcctggacatcaaagagtgt
aacatcgttattcgctatggcctcgtcaccaatgaaattgctatggtgcaggctcgtggt
agagctcgagctgatgaaagcacctatgctcttgtggtttcaagtggctcaggggctgtt
gaacatgaaaatgttaatatttttcgtgagaaaatgatgtataaggccattcagcgtgtc
cagaagatgccacaggaagagtatttaaaaaagattcagagtttccagtcgcaaagtata
gtggaaaaacaaatgaaggtgatgagagatcagcgcaagacatacaagaaaaatccttca
ctaataaaattcttatgcaaaaattgctccaagccgatatgttctggagaagacatacaa
gttattgaagacatgcatcatgtcagtgtgaaaaaagatttccaaagtctttatcataca
agagaaaataaatcactgcaagataagcgtgctgattacccgacaaatggggaaattata
tgcaaagactgtggacaagcttggggacatatgatggttcaccgaggtcttgacctacct
tgtctgaagatcagaaattttgtggttgtgtttgcagacaagaaatcaacgaacaatatt
tttaagaaatggggagagctgcccatcaggtttcctagttttgattatgcagctcactgt
ccttcaagtgatgaagattag
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