Serinus canaria (common canary): 103814825
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Entry
103814825 CDS
T05755
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
scan
Serinus canaria (common canary)
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scan03000
]
103814825 (RC3H1)
04121 Ubiquitin system [BR:
scan04121
]
103814825 (RC3H1)
Transcription factors [BR:
scan03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103814825 (RC3H1)
Ubiquitin system [BR:
scan04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103814825 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
103814825
NCBI-ProteinID:
XP_018767584
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYENALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYSAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAPEAGAPYLEHYGPYLPERVVSPQYAQPQGY
PALAQPMYPPHYDGRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPEARDRYQQTEA
YCPVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMREQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
AATKSIISDYSPYETHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQNKVPAEDLTLTFS
SDVPNGSALTQENIGLLSNNMASLSLSEDPEGGGDGHDSQRGGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaaccatccggaagcccatcagcttgggctgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacagac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccgattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattggcattgtacctcaaaccactcagcagtgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcccggtcg
ctgggtgagagaacagtcacagagctcatcctccagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggccctaaaactggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccgcgattccctcaggcttccaagact
agcattggccatgttgtccagctcctttacagggcctcctgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggaattcaggacttacgaggctctgaga
agggagcacgactcgcaaatagttcaaatagcaatggaagcgggtttgcgcattgcacca
gaccagtggtcctcgctcttgtatggagaccagtctcacaaatcccacatgcagagtatc
attgacaagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacttgaatcgtcttagacctcacctagagctccta
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggtttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggaggatgtccccggggggccagctgcacctttgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaatagtgtcaaca
ggcagcacagtgacacaactgatttctcgagggactgactccggttatgaaaatgccctg
aagccagggaagatggaccatctgagcagcagtgcccctgggtcccctcctgacttgctg
gaatctgttcccaagagctctatttctgccttgccagtgaaccctcatcctgtgcctgct
cgggtgccagcagatctgccctcagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtgcacaacaagcagatatgttttatcaagaccccagaggggct
gccccatcgtttgagccagcaccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccgtcagcccccgaggcgggcgcgccgtacctggagcac
tatgggccgtacctgccggagcgcgtggtgagcccgcagtacgcgcagccgcagggctac
ccggccctggcccagcccatgtacccgccgcactacgacggccgccgcgtgtaccccccc
gtgcagccctaccagcgcgaggacgtggtgcggggcagcccggtgcccatcgacatcccg
caggcggccgtgcccctctacgtgcctgaggccagagacagataccagcaaacggaggct
tattgcccagtggctccgcatcttgggcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagatcatggcccagctggaagagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactctccatggtcctgtgacaccatcggctcctacatcgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaacgtg
gacagtaaagccatgcgtgagcagcgcctggacatgcagcggcgagcggccgagacgggg
gacgatgacctcattccctttggagaccgaccaactgtgtcaagatttggggccatctcc
cgtacttccaaagccatgtaccagaactctgggcccatgcaggccatggcagttcaggga
gctgccaccaaatccatcatttcagactacagtccttacgaaacccacggtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggacgtttcaatgacagggag
aggctgtccatgtcagatgtggctggtcatgggaagcagttgccctcagctgaacgagag
cagcagctacgcatggaactgcagcaagttgaccatcagatcagccagcagacccaaatg
agggggctggaggctgttagtaacaggctgctgttgcagagagaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatatgaaaaacaagctgggcaccactaaacagacagaa
aatggacaattagaaccacaaaacaaggttccagctgaggaccttacactgacattcagc
agtgatgttccaaatggatcagctttgacccaagagaacattgggctcctgtcaaacaat
atggcatctctcagcctgtcagaggaccccgagggaggaggagatggccatgactcccag
cgagggggagtgacacccacatctgctccatga
DBGET
integrated database retrieval system
