Serinus canaria (common canary): 103817161
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Entry
103817161 CDS
T05755
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
scan
Serinus canaria (common canary)
Pathway
scan04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103817161 (COL7A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Fndc10
DUF1194
YjeF_N
Motif
Other DBs
NCBI-GeneID:
103817161
NCBI-ProteinID:
XP_018770634
LinkDB
All DBs
Position
Unknown
AA seq
3052 aa
AA seq
DB search
MSSQLLLLAVLPALLRPPAAMAQKRSQAVCEDVLEADIAFLVDGSSSIGRNNFRAVRTFM
EELVGPFVQVVGEKAVRFAMAQYSDDPRVEFSFSQHTDGTSVRRAIQQLSYKGGNTRTGA
GFRYIADNFFGPTQRRPGVPQICILITDGKSQDDAEGPAAKLKSQGIKVFAVGIKNADRK
ELIRVASMPTDAFFFYVGDFKLLDTLLPLITRRVCTTVGGTLRLLDGPSHTGPSNLEVLE
RGLDHLRIRWRAASGPITGYRVQYVPLTGLGQPIMAERQEVSVGPRETNTVLRGLRVGTE
YQVTVTAQYANSIGESVSGRARTQSRAGSVLDFRVVETGPTFLRLAWQPGPEPPQGYSLS
YAVQGAPQREEKSLTASAQSATLSNLQPDTEYMVMLQPHYAQQPAVPATLTARTRHLVGV
QHLTVHNVSAQSMLLAWQPVSGATGYRLSWATRTGQVSHRVDLDAGQRSHALVGLQPNTD
YVVTVAPLFRQLEGPTATVRQRTEAGTDQTLQTNILGPTSIQVLWTSARDARGYRLEWKR
ATGPEPPRTVSLPSSTNTYQLTGLKPGTEYRITLYTLYDGGEVATPVTTFQTGVEVPMGA
VSDLRLVEESGRWVRLSWTGVPGATEYKVVVRNSQDGTERTRRIPGSQTGLELGDLREGI
PYLVRVSALAGGREGSAATLTVRLKYPEVGSISDLRVMEAGPSQLRVTWRGLPGAGGYLL
TWQGSDGLKKSRFLPADPTTFTIDGLHANIVYTVSVSAIVDGREGSPVTATGRIVPEQVG
KVTQLEVQASRSNVARVTWVGVPGATAYRVVWSRRDGGSENSRRVPGHTNSFDIPNLEGG
VSYTVKVTALIGNREGNPVSIVVTTPEAVPLRPVSGFQVTEASEHRLLLTWLPVAGSTGY
RLFWRLAEGGPQHSQQLPATSSSYALSGLEPGRHYHISITSLAGSRESEPATITAITTAP
SRITSLRVTEVQRDSVTLTWTPVPGASGYVLSWSPPAAGGEKGRTLPSTASSQQVSGLRL
GQRYTFTLRPLLGSTPGTEVSISERTVCRDALGDVVFLVHGTRNSSSGANAVRTLLSNTV
SALGRLGPEGTQVALATYSYRSLPWLLLNRSSDLPTVLEQIRAMRYEEPSGNAIGAAMTF
ARTYLLSPGAGRRPGVPAVLVVLADGPSGDDAITVARDVKAGGVQVLAVGMEGADREQLR
RMVTSEDPRYIYHGSDLAELEGDLTDDLCTIISTRPAPKPKPCTVKCPKGEKGDRGEAGL
QGRMGPPGLPGQPGRHGLPGSPGPPGPQGPPGESAEGPGKKGDRGFPGADGVPGSPGRPG
NPGSPGQPGIQGIPGPRGDPGLRGPMGLPGPKGEKGEPGEPRVITDGEQGLPGQKGEPGV
PGRPGSPGIPGPRGPLGDPGPPGPLGPMGLPGPPGEFVKGEKGDRGERGPPGFADGAVPR
GDPGPPGLPGDPGPRGPAGPPGLKGEKGDGTEGFPGPPGRPGDPGDRGPRGPPGEQGRKG
DRGAPGELGETGEKGDRGVPGPEGEKGEMGAPGHPGPSGREGAPGPTGPRGEKGDPGPPG
RPAPSVEGVGEKGDRGFPGPEGPPGPKGNTGDKGARGPPGLSIPGPAGPKGEQGDRGIVG
LTGRSGPKGDPGEPGEKGEPGRAGAPGQMGPRGKEGERGEKGDEGTPGEAGLPGKPGDRG
PRGLPGYRGPPGEKGDLGDPGPEGRNGSPGAPGSKGDRGDPGLPGPPGRTVDVGLGGVGG
KGEKGDPGDPGEDGAKGARGDAGSPGVPGERGVEGPRGPPGTRGDPGDRGLPGEKGDRGP
PGLDGRNGLEGKPGPPGPAGLRGDPGKQGDPGRDGLPGLRGEQGPPGPVGPLGPPGVPGK
PGEDGKPGLNGKNGEDGTPGEDGRKGDKGDTGLPGREGRSGAKGEQGDRGVPGPLGPPGL
PGVPGQVGPPGQGSPGLRGVAGPKGDPGEPGLRGEPGRPGSPGARGDPGTTVNIERSLEA
LGIKVSSLKELTGAYDGSSDSFPPAVERLRGQKGSRGDPGERGPPGREGSLGFPGERGPK
GDKGDPGTPGPQGPMGRAVGERGPEGPPGQPGEPGKPGIPGVPGRAGELGESGRSGEKGD
RGEKGDRGEQGRDGLPGPPGPPGPKVDVVEGSLMGLPGERGPIGPKGAKGEPGAEGERGP
KGDKGEGGLRGDRGEPGEKGRDGSPGLPGERGLAGPEGKPGLPGFPGVLGRPGNQGDPGP
PGPPGSAGPPGTQGPAGAKGDPGEPGSSIRGLPGPQGNMGLPGPLGPPGPGGPPGVPGLP
GQVGESGKPGVPGRDGVPGKDGEAGVPGKMGLPGPSGPAGPKGEPGDAGAPGQAIIGPPG
AKGEKGEPALLEGVLLGEPGSKGDRGLPGPKGDKGEPGKFGEPGDPGEDGAKGSSGAKGE
KGSVGVGARGPPGQDGPPGLKGDTGLPGLPGPPGLAGPAGMPGQPGLRGDNGQPGPPGPP
GERGLIGFPGRDGTAGPPGPVGPPGPAGIQGPPGLKGDKGAPGAGLPGARGERGDPGPRG
EDGRPGPEGDRGPAGLPGNRGERGDKGDIGAPGPKGDKGDTVVVEGPPGARGSKGEPGER
GLKGTEGDKGDKGEQGMLGEKGTRGEQGEKGSMGFPGARGPSGQKGEVGAPGEPGEPGQP
GRDGIPGARGDKGDMGPLGMRGLKGDRGMKGACGLNGEKGDKGEPGIPGRSGLPGRKGEP
GELGLSGPPGIPGKEGLMGPKGDRGFDGQQGAKGDQGEKGDRGAPGVMGGPGPRGSDGAP
GPPGPSGSVGPRGPEGMQGQKGERGPPGQSVPGARGMPGIPGERGEQGSPGTHGLRGEKG
EPGMTEEEIRAFVRQEMSQHCACGGHFPRHQDSREHSGCSSSFLSPCPTHVAQKEPWHPG
GWGAQARSSFHSAQGAGRIVRQENEHDQTGSFSTQPFLAGSAHVVPVLKLSHTEEDEGQD
RQITLDDDDLAYDMDGEEDDYEEVPEMESVEQPTVDAEPCRLPLDEGRCQRYTLRWYYNQ
RARECRPFVYSGCQGNPNRFHSKEECELHCGQHPGADSRGSAGSTEGGQPKV
NT seq
9159 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccaactcctgctcctggctgtgctcccggcgctcctgcgtcctccagctgcc
atggcacagaagaggagccaagcagtgtgtgaggatgtgctggaggctgacatcgccttc
ctggtggatggctcatccagcatcggaaggaacaacttccgtgctgtccgcaccttcatg
gaggagctggtggggccgtttgtgcaggtggtgggtgagaaggcagtgcgctttgccatg
gcacagtacagtgatgacccaagggtggagttctcattctcccagcacactgatggcaca
agtgtccggagggccatccagcagctgagctacaagggtggcaacacacgcacaggtgct
ggcttccgctacattgctgacaacttcttcggccccacgcagcgccggcctggggtcccc
cagatctgcattctcatcacggatggcaagtcccaggatgatgctgaggggccagcagcg
aagctgaagagccagggcatcaaggtctttgccgtgggtattaaaaatgctgaccgcaag
gagctgatccgtgtggcctcaatgcctactgatgccttcttcttctacgtcggtgatttc
aagctgctggacacgctgctgccactgataacgcgaagggtgtgcaccactgttgggggc
accctgcgcctgctggatgggccaagccacactggcccctccaacctggaggtcctggag
cggggccttgaccatctgcggatccgctggagagcagccagtggtcccatcactggctac
cgggtgcagtatgtgccactgacagggctagggcagcccatcatggcagagaggcaggag
gtgagcgtggggccacgggagacaaacactgtgctacggggactgcgtgttgggacagag
taccaggtcactgtcactgcccagtatgccaacagcatcggcgagtcagtgtctggccga
gcacgaacccaaagccgtgctggctccgtgctggattttcgcgtggtggagactggacca
acctttctgcggctggcctggcagcctggccccgagcccccccagggctacagcctcagc
tatgctgtgcaaggagcacctcaaagagaggagaagagcctgacagccagtgcacagtca
gccacactcagcaacctgcagcctgatactgagtacatggtgatgctccagccccactat
gcacagcagcctgctgtccccgccaccctcaccgcccggacacggcacctggtgggcgtg
cagcacttgactgtccacaacgtgtcagcacagagcatgctgctggcctggcagcctgtc
agtggtgcgaccggctaccggctctcctgggcaacccgcacagggcaggtcagccacagg
gtggacctggatgccgggcagaggtcacatgcattggtggggctgcagcccaacaccgac
tatgtggtgacggtggccccactcttcaggcagctggaggggcccacagccactgtgcgg
cagaggacagaggcaggtacagaccagacgctgcagaccaacatcctgggccccacatcc
atccaagtgctctggaccagtgcccgtgatgctcgtggctaccgtctggagtggaagaga
gccacaggaccagagccccccagaacagtgtctctccccagcagcaccaatacttaccag
ctgacggggctgaagccaggcactgagtaccgcatcaccctctacacgctctatgatggc
ggggaggtggctacccctgtcaccacctttcagacaggcgtggaggtacccatgggtgct
gtgtcagacctgcggcttgttgaggaatcgggcaggtgggtacggctgagctggaccggt
gtccctggtgccaccgagtacaaagtggtggtgcgcaacagccaggatggcacggagagg
acgaggcgcatcccaggcagccagacggggttggagctcggtgacctccgggagggcatc
ccctacctggtgcgtgtctcagcactggcaggcggccgggagggcagtgctgccacgctt
actgtccgcctcaagtatccagaggtgggcagcatttcggatctgcgggtgatggaagcc
ggtcccagccagctgcgggtcacctggagagggctaccaggtgctgggggctacctgctg
acgtggcaaggcagtgacggtctgaagaaatctcgcttcctccctgctgaccccaccacc
ttcaccattgatgggctgcatgctaacatcgtctacaccgtcagtgtctcagccattgtg
gatggccgtgagggcagccctgtcactgccacaggacgaatagtgccagagcaggtgggg
aaggtgacccagctggaggtgcaggcatccaggagcaatgttgcccgtgtcacttgggtc
ggtgtgccgggagccactgcctaccgtgtggtgtggagccgcagggatgggggttcagag
aatagccggcgagttcctggccacaccaactcctttgacatccctaacctggagggaggc
gtctcctacactgtgaaggtgacggcactcattggcaaccgggaaggcaaccctgtctcc
attgtcgtcaccaccccggaggcagtccccctacgccctgtcagcggcttccaggtgacc
gaggcctcggagcaccgcctgctcctgacctggctgccagtggctggcagcactgggtac
cgtctgttctggcgcttggctgaaggggggccccagcatagccagcagctcccagccacc
tccagctcttatgctctgtcgggactggaaccgggccggcactaccacatcagcatcacc
agcctggctggcagccgggagagcgagccagccaccatcactgccatcaccactgcccca
agccgcatcaccagcctgcgggtaacagaagtgcagagggattcggtgactctcacctgg
accccagtccctggtgcctctggctatgtcctctcctggagcccgcctgcagctggtggg
gagaaggggcggacgctgcccagcactgccagctcccagcaggtctctgggctgcgcctg
ggccagcgctacaccttcaccctccggccactcctggggagcacaccgggtaccgaggtg
tccatcagtgagcgcacagtctgcagggatgccctcggtgacgtggtctttctagtacac
ggcacccgcaacagctcctctggtgccaacgctgtccgcaccctcctctccaacaccgtg
tctgccctggggcgcctgggccctgagggcacacaggtggccctggccacatacagctac
cgcagcctaccctggctgctcctcaaccgctccagtgacctgcccaccgtgctggagcag
atccgtgccatgcgctacgaggagcccagcggcaacgccatcggggcagccatgaccttt
gccaggacctacctgctgagtcctggtgcagggcgccgtcctggggtgccagcagtgctg
gtggttctggctgatggcccctctggggatgatgccatcactgtggccagagatgtcaag
gctgggggggtccaggtgctggcagtgggcatggagggggcagaccgggagcagctccgg
cgcatggtcaccagtgaggacccacggtacatctaccatggcagtgacctggcagagctg
gagggagacctcactgatgacctctgcaccatcatctccaccaggccagcaccaaagcca
aagccctgcactgtgaagtgccccaagggcgagaagggagaccgcggtgaggcaggactg
caaggacgtatgggaccaccaggtctccctgggcagccgggtcgccacgggcttcctggc
tctccaggaccaccagggccacagggtccaccaggagagagtgctgagggtccgggcaag
aagggggacaggggatttcctggagccgatggagtaccagggagccctggacgccctggg
aatcctggatcacctgggcagccaggcatccagggcatccctggtcctcgaggggatcct
ggtttgcgtgggcccatgggactccctggcccaaagggggagaaaggtgaaccgggagag
cccagggtgatcacagatggagagcaggggctgccaggccagaaaggggagccaggtgtg
ccgggccgccccggctcacctggaatccctggcccacgggggcctcttggtgatccaggc
ccccctggtccacttggacccatggggctaccgggacctcctggagagtttgtgaaggga
gagaagggtgaccgaggggaaaggggcccccctggatttgcagatggggcagtacctcga
ggggaccctggacccccaggcctccctggggaccctgggcctcggggacctgctgggccc
cctgggctgaagggagagaagggtgatggcacagaaggtttcccagggccacctggccgt
cccggggacccaggagacaggggtcctcggggaccaccaggggagcagggcaggaaggga
gaccgtggtgcaccgggcgagctgggagagacaggcgagaagggagaccgtggtgtgcca
ggcccagagggtgagaagggtgagatgggagccccagggcacccggggccatcaggcaga
gagggagctccaggacctacaggcccccggggagagaagggcgatccaggaccacctggc
aggccagctcccagtgtggagggtgttggagagaagggtgacagaggtttcccaggacca
gaaggacctcctggccccaagggtaacacaggagataaaggtgcccgtggtccccctggc
ctgagcatccctgggccagctggccccaaaggcgagcagggcgatcggggcatcgttggc
ctcacaggcaggagcggcccaaagggtgacccaggagagccaggggagaagggggagccg
ggccgagcgggcgcccctgggcagatggggccgcgaggcaaggagggagagcgaggagag
aaaggtgacgaaggcaccccgggagaagcaggcctgcctggcaaacctggagacaggggt
ccccggggccttcctggctaccgtggcccccccggggagaagggtgacttgggggaccca
ggacctgaaggcaggaatggcagccctggagcaccagggagcaagggtgaccgtggggac
ccagggcttcctggacccccaggacgaactgtcgatgttgggctcggaggagtgggggga
aagggtgagaagggggaccctggggacccgggtgaggatggcgccaagggtgcccggggt
gatgctggctcccctggagtgcctggagagaggggtgtggagggcccccgtggcccccct
ggcacacggggtgaccctggggaccgaggcctgccgggagagaagggggaccgtggcccg
ccagggctggatggccgcaatgggctggaaggcaaacccgggcccccagggcctgctggg
ctgaggggggacccagggaagcagggagatcctggccgggatgggctgcctgggctgcgg
ggggagcagggaccacctggccccgtgggtcccctgggaccgcctggtgtgcctggcaaa
cccggtgaggatggcaaacccggcctgaatggcaagaatggagaagatgggacaccagga
gaggatgggagaaagggagacaaaggtgatacaggactacctgggagagagggccgcagc
ggtgccaagggcgagcagggggacagaggtgtgccaggccccctcggcccccctggcctc
cccggcgtcccagggcaggttggcccccctggccagggctccccaggcctccgtggggtg
gctgggcccaagggggacccaggggagcctggactgcgaggggagccggggcgacctggc
agccctggagcacgtggagaccctgggactacagtgaacattgaacgtagcctggaagca
cttggcatcaaggtttcatccctgaaggagctcacgggtgcctatgatgggagctcagac
tcgtttccgccggcggtcgagcggctgcggggccagaagggcagtcggggggatccagga
gaaagggggcccccgggccgagagggctccttaggcttccctggcgagcgaggacccaaa
ggtgacaagggagacccaggtacccccggcccccagggccccatgggccgggccgtgggt
gagcggggtcccgagggcccgcctgggcagccaggggagcctggcaagccaggcattcct
ggggtgccgggccgggctggggagctgggggaatccgggaggtccggcgagaagggcgac
cgaggcgagaagggtgaccgaggtgagcagggaagggatggcttgcctggacccccaggg
cccccagggcccaaggtggacgtggtggagggcagcctgatgggcctcccaggagagcgt
ggccccatcggacccaaaggagccaagggtgagcctggagctgagggcgagcgaggaccc
aaaggagacaagggtgaaggtggcttgaggggtgaccgaggggagcctggcgagaagggc
agggacggcagcccgggcctcccgggtgagagagggctggcaggccctgaggggaagccg
ggcttgccaggctttcctggcgtgctgggacgcccgggcaatcagggagacccaggaccc
ccaggacctccgggcagtgctggccccccagggacccagggcccagctggtgccaagggt
gatccaggggaacctggctccagcatccgtggcttgcctggcccccagggcaacatgggc
ctgccaggaccccttgggccccctggcccagggggcccgccgggggtccccgggctgcca
ggacaagtgggggagagcgggaagccaggcgtgccaggcagggacggtgtgccagggaag
gacggtgaggcaggagtgcctgggaagatgggcttaccgggaccttcggggcctgctggt
cccaagggagagccaggggatgctggagccccagggcaggccatcatcggcccccctgga
gccaagggagagaagggtgagccggcgctgctggagggtgtgctgctgggagagcccggc
tccaagggtgaccgaggcttgccaggccccaagggtgacaagggggagccaggaaagttt
ggagagccaggagatcctggggaagatggagccaaggggtcctctggagccaaaggggag
aagggatcagtgggtgtcggtgcacggggaccaccaggacaggatgggcctccgggtctg
aagggtgacactggcttgccaggattaccaggacccccaggcttggcaggccctgctggg
atgccaggacagccaggcctgagaggggacaatggacagcctggccctccaggtccccca
ggagagaggggtttgattggctttccaggcagggatggcaccgctggaccaccaggacct
gtggggcccccagggccggccggcatacaagggccccctggcctgaagggtgacaagggt
gctccgggagccgggctgccaggagccaggggtgaacgtggtgacccaggaccacggggt
gaggatgggcgcccagggccagaaggggatcgtgggccagcaggcttgcctgggaaccgt
ggggagcgtggggacaagggagacattggggccccaggacccaaaggagacaagggtgat
actgtggtggtggaggggccgccaggagcacggggcagcaagggggagccgggagagcgt
ggcctgaagggcacagaaggggacaagggggacaagggggagcaaggcatgctcggagag
aagggcacgaggggtgaacaaggagagaagggctccatgggcttccctggggcacgtggc
cctagtgggcagaagggagaggttggagcaccaggagagcctggcgagccgggccagcct
ggccgtgatggcatccccggggcccggggggacaagggggacatgggacccctgggcatg
cgtggcctcaagggtgaccggggcatgaaaggtgcctgtggcctcaatggggaaaagggt
gacaagggagagccagggatcccagggcgctcgggactgccagggaggaaaggagagccg
ggagaactgggtctgtcaggaccaccaggcattcctggaaaggaagggctcatgggaccc
aagggtgaccggggatttgatgggcagcagggagccaaaggagaccagggggagaaagga
gaccggggtgccccgggtgttatgggtggccctggtccccggggcagtgacggtgctcct
ggcccccctgggccctcagggagcgttggcccacgaggtcctgagggcatgcagggccag
aagggggagagaggcccccctggacagtcagtgcccggtgcacgtggcatgcctggcatc
cctggtgagagaggagagcagggcagtcctggcacccacgggctccgtggggagaagggg
gagccaggcatgacggaggaggagatccgtgccttcgtcaggcaggagatgagccagcac
tgtgcctgtggtggccacttcccacggcaccaggactcgcgtgagcactcaggttgcagc
tcttccttcctatccccctgccccacacatgtggcacaaaaggagccctggcacccagga
ggctggggggctcaggccaggagcagcttccactctgcccagggagcaggaagaatcgtc
cgccaggagaacgagcatgaccaaacagggtccttctccactcagccgttccttgctggc
agcgctcacgtagtccctgtgctcaagttgtcacacactgaggaggatgaggggcaggac
aggcagatcacgctcgacgacgatgacctcgcgtatgacatggatggagaggaggatgac
tacgaggaggtcccagagatggagagtgtggagcagcccacagtggatgccgagccctgc
aggctgccactggacgaggggcgctgccagcgctacaccctgcgctggtactacaaccaa
agagcccgcgagtgccggcccttcgtctacagcggctgccagggcaaccccaaccgcttc
cacagcaaggaggagtgtgagctgcactgcgggcagcaccccggggcagattcccgcggc
agtgctggcagcacggagggagggcagccaaaggtgtag
DBGET
integrated database retrieval system
