Serinus canaria (common canary): 103817210
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Entry
103817210 CDS
T05755
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
scan
Serinus canaria (common canary)
Pathway
scan03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
103817210 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
scan01009
]
103817210 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scan04515
]
103817210 (PCDH1)
Protein phosphatases and associated proteins [BR:
scan01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103817210 (PCDH1)
Cell adhesion molecules [BR:
scan04515
]
Cadherins
Protocadherins
103817210 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
103817210
NCBI-ProteinID:
XP_018770830
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MNPLASCLGLWLLCQLPALASGTRAVYKVQEEQPPNTLIGSLASDYGLPDMGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRESLRECQHLLPGEPCFLEFEVSITNLNANSSPRLLEGQ
IEVLDINDNTPNFASPVLTLSIPENTNVGTLFPIPLAMDRDSGPNGVASYELMAGPEAQE
LFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMND
NAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRA
TGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLV
THQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKK
YFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNAPVFSQSFTEVAF
PENNEPDELVMEVSATDADSGSNAKLVYSLVTDPSSKGSFTIDPDSGEIRVKAVLDREQR
ERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVT
VIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPR
SAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKAEDIDSGINAELIYS
ITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNET
LANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVR
YCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKNKVKKSKSPKPPKPTEDEEETGLQKS
LKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSXXXXXXXQSP
SASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAAS
QAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPE
NDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFVPYQDRGSQEQ
VGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPATTPSA
QTTKREIYL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgctggcatcttgcctgggcctgtggctcctctgccagctccctgccctggcc
tcggggacacgtgcagtctacaaagtgcaggaggagcagccccccaacaccctcataggg
agcctggcctccgactatggcttaccggacatggggcacctctacaagctggaagtgggg
gccccatatctccgtgtggatggcaagactggggacatctacaccacagagacctccatc
gaccgggagagcctgagggagtgccagcacctcctgcccggagagccctgcttcctggag
ttcgaggtgtccatcactaacctgaatgccaacagcagcccacgcctgctggaggggcag
atcgaggtgctcgatatcaatgacaacacccccaacttcgcctcacctgtcctcaccctc
tccatccctgaaaacaccaacgtcgggacgctcttccccatccccctggccatggaccgg
gactcgggccccaacggcgttgcctcctatgagctgatggctggtccggaggcgcaggag
ctctttgggctgcaggtggccgaggaccaggatgagaagcagcctcagctgatcgtcatg
gggaacctggaccgggagcagtgggactcctacgatctgaccatcaaggtgcaggatggg
gggaaccccccacgggcgagcagtgccctgctccgcatcaccatcctggacatgaacgac
aacgcgcccaagttcgagaaggccctgtacgaggcagagctctccgaaaacagccctgtg
gggcactccgtcctccaggtgaaagccaatgattcggaccagggcgccaacgccgagatc
gactactccttccaccaggcctcggacatggtgcggcggctgctgcgcctggatcgagcc
acggggctcatcaccgtgcagggccccatcgaccgcgaggacatcggcaccctcaagttc
tccgtcatggccaaggacaagggcgccaaccccaagagcgcccgcacacaggtggtggtc
accatcaaggacatgaacgataacgcgccctccatagagatccggggcatagggttggtc
acccaccaggatggcatggccaacatctcagaggatgtgccagtagagacagcagtggct
ctggtgcaggtgtctgaccgagatgagggtgaaaacgctgtggtgacctgcgtggtggcc
ggtgacgtcccattccagctgcgccaggccagtgagacagggagtgacagcaagaagaaa
tacttcctgcagaccaccacgccactggactacgagtcggtgaaggagtacacgattgag
attgtggctgtggactcggggaatccgcccctctctagcaccaactccttgaaggtgcag
gtgatggatgtcaatgacaacgcccctgtcttcagccagagcttcactgaggtggctttc
cctgagaacaacgagcctgatgagctggtcatggaggtgagtgccactgatgctgacagc
ggctccaatgccaagctggtttattccctggtgacagacccctcctccaagggctccttc
accattgaccctgactccggggagatccgggtgaaggcggtgctggaccgagagcagcgg
gaacgctacgagttcttggtggtggcggaagataagggcagccccagcaagcagggcaca
gcgtctgtggccatcaacgtcatggacagaaatgacaacgaccccaagttcatgctgagc
ggctacaacttctcagtgatggagaatatgccgcccctcagccccgtgggcatggtgacg
gtcatcgatgctgacaaaggagaaaatgcccggatccagctgtcagtggagcaagacaac
ggggattttgtcatccaaaatggcactggcaccatcctctccagcatctctttcgaccgg
gagcagcagagtacctacaccttccgactcaaggcagtagacggtggggatccccccagg
tctgcctacgtgggggtgaccatcaacgtcttggatgagaatgacaatgcccccttcatc
acttccccctccaacgccacctacaagcacatcctgccccacaccagccccggccagcaa
gtgagcaaggtcaaggcggaggacatcgactcgggcatcaacgccgagctgatctacagc
atcacaggaggaaaccccttcgagctcttccagatctccccgcagagcggtgacatcact
ctggagaaggagatcctgcgcaagcaccacggcctgcaccgcctggttgtgcgtgtcaac
gacaagggcaagccctcgcggcacggcacggctctggtgcacttctatgtcaatgagaca
ctggctaaccgcacgctgctggacacgctggtggggcacagcctggacaccccactggac
atcgacattgctggtgaccccgagtacgagcgcagcaagcagcggagcaacatcctcttc
ggggtcatcgctggcatcgtggctgtcaccctggtcatcgtgctggtggtcctggtgcgc
tactgccggcagcgcgaggccaagagtggctaccaggcgggcaagaaggagaccaaggac
ctgtatgcacccaagcaggccagcaagagcgggaagagcaagaacaaggtgaagaagagc
aagtctcccaagccacccaagcccacggaggatgaggaggagacggggctgcagaaatcg
ctcaagttcaacctcatgaacgactctgtcagcgacagcccccggatccacctgcccctg
aactaccccccgggcagcccggacctgggccgccactaccgctccaactcgccgctgccc
tccatccagctgcagcctcagtcaccctcannnnnnnnnnnnnnnnnnnntcagtcaccc
tcagcctccaagaagcaccaagtggtgcaggacctgccggccaccaacacctttgttggc
accggggacaacaactcgacgggctccgagcagtactcggactacagctaccgcaccaac
ccccagaaatacaccaacaagcagttacctcatcgccgagtgacgttctctgcagccagc
caggctcaggacctgcaggacccctcccagcacagctactacgacagcgggctggaggaa
tccgagacccccagcagcaaatcttcatcggggccccgcatcgggcccctggccctgccc
gaggaccactacgagcgcaccacgcccgatggcagcattggggagatggagcaccccgag
aacgatctccggcctctgcccgatgtagccatgactgggacctgcacccgggagtgcaca
gagttcggccactccgacacctgctggatgcctggccagtcctcccccagccgcaggccc
aagaacgccctcaaactctccacttttgtgccttaccaagacagagggagtcaagagcaa
gtcgggaacggcagccccagactgtcggaagagcgcagcaccaaaatggccaacctccgc
ctgctccccacgtacagtgccttctccaatagtagccatgagccctgcaaggactctccc
atggaggaaattcctctcacccagacctcggacttccagccagccaccaccccctcggcc
cagaccaccaagagggagatctacctgtga
DBGET
integrated database retrieval system
