Serinus canaria (common canary): 103817926
Help
Entry
103817926 CDS
T05755
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
scan
Serinus canaria (common canary)
Pathway
scan03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
103817926 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scan04121
]
103817926 (SLX4)
03400 DNA repair and recombination proteins [BR:
scan03400
]
103817926 (SLX4)
Ubiquitin system [BR:
scan04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
103817926 (SLX4)
DNA repair and recombination proteins [BR:
scan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
103817926 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
zf-met
zf-C2H2_4
Zn-C2H2_12
Baculo_IE-1
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
103817926
NCBI-ProteinID:
XP_018771674
LinkDB
All DBs
Position
Unknown
AA seq
1839 aa
AA seq
DB search
MDDQDNDFKELWVNILSGAKKKAGDAEATKRVQNRPKSTTTRSKLRRGKAAAKSQIHHHL
PAVKEKNFLQNLGPKEQTLVHEEDGDVSACSGETAQGDGARSPLPASQLSTGTTECSQRS
LTVNAPSGCSQTTLPFLPATPPGLCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGS
VPKAAASWDFPARSQEQKPPEDDTQHLPSMEHDSALALALQQESKEEALASLEDAGLFFC
QICQKDLTAMNSLRREQHVNRCLDEMEEAQVSSCSKPVVPECPICGKQFQTPQSRVSHLK
RCAVEMDVPPNLLLQAVHLQVATLGDAALQCPSNQPSRAKRKGSSNEDLRKTQKRARMEP
KDEDLQVAMAMSRSLLEQEKQEQAKSVTNVKAVAAFPIKWKPGSEKKRRKKGTNAPPPLL
LQDPEKVHKRIQERVAMMLTEEVEFSPTPQLPISRILEDESGKAAWLMPLCKASKCFLWN
ISALTGPCDPESFYTAALSPPIEPWKPVQNKPENLQPSVGSPQPKVSQQTQPDLSSQEPT
CTKVGGQTSDESRPGSEGDGQLLSPSQDIQTLQDLVDLAREGLTLTQWNLDTGHVQTAEQ
PGEEVTSSDPPLSGFVPPSKKKSLLRSSSKRSSLGLLAQDFGAMVNNPHLSDVQFQVDSG
EVLYAHLFVLYARCPAAAQAVHSEGLLVEEDGAAPTRRALLSDVSAQAVAAFLRYLYAAD
TNFPAGLRPQLQALAARFGVRELMAECESSTGESQVSSGVDSEDDLISVRDDEECEDRAE
NFQDLLKSMWVGEDEEEVAMLSPECQKEDDSEVGEQELEEIYEFAATQRKMAQGEREVSE
GTDCSICSDTEAVQGTNQQTEQEEVKRPESASVSNSLEDLRDGNGVERSKCDLSAQEEKM
QNINRCKSTNDPQTSIVPHHTEPQKWEGTSHGANEGGALGGREDVKDSRSPQVSHDKADH
CEEQFPGFQGDADINDSYEHLFSASQGYHCEPSPVKEVTKESGKSPSKKHVGLNDSVVFS
KSQKVCSPCKNGFCRSPTPQPYVSLFPALGSSPASPKSEAKFARERVSTPKQNKKEKSFP
SCEIHSQKAKELGAASKNEITVSPAELPHSESNKQTHVPVLSSPGRTQDAAAQGIKEGYV
IVLSSDDDEMELQQGKKLPESDSALKEMEVPGHLKCTDMEQGPEIPKPDHNSSVPDTEQR
SAQVSCGNTDTLCVRGDVKVFPEFPLSRQTGACTEIKQSPNLSPGKRLSNEMSPGTDSSW
LVPGTPVLSKSRSFSTQTLVTSINSLKGPGSKLSTKNLAAGNSNHEMAGNLIKVHETTLS
DKHLPMENLASGRSPPSSPAAESFSNNPLPVSPVDPVLLSPGHTNREGKCANISALPTLV
PLCQEQPLEDKINISVVELEDSDREVSLPSLGSSVLLCEEPPLPVDDCWHVGYLSPARGD
SHGSSQVSHAKASKASSPSPGSWQEQGESPVQVQGIQGSTPLQGSPAGRRTTLHCPEKSP
IEPCSSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAAGACQTDPVKTPEPSC
QENRSPSTPVTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLKEIFQYTHQDGDSDF
EDEISYSQPLPQKSPRQPKAGRAARAVSKRKQSVKADGASHGTGCAAPKDRTKVTHRPGG
AKEQERPAVSLAADGEELPASQESARSSVDGSDISFGSQSSFVNGFETCAFTSEEEEEEF
PASQAAAREEEKLEAVRCYIRSNTALYNRILFYEPIELADLHAELKQNGIKISKAKLLDF
LDSQCITSTMARARKEQEQKRKESRKQRRRYRVKPTPPL
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcaggacaatgatttcaaagagttgtgggtgaatattttgagtggggcaaag
aaaaaggctggggatgctgaggcaacaaagagggttcagaacaggccaaagagcaccaca
acacgaagcaaattaagaagaggcaaagctgctgctaagagccaaatccatcatcactta
ccagcagtgaaggagaaaaacttccttcaaaatttgggtccaaaggagcaaacgttggta
cacgaagaagatggtgatgtttcagcctgtagtggtgagactgcacagggagatggagca
agaagccccctccctgccagccagctgagcacaggcaccactgagtgtagtcagaggtct
ctgacagtaaatgctccaagtggctgttcccagactaccttgcccttccttcctgctact
cctccaggactctgctcctcacccacccccaaggtgcgggtggcagagctggtggtggag
agaatgcagcagttcaagagggtggcacccgagcagctgaagcacagctcggatgggagc
gtgccaaaggctgcagccagctgggatttccctgccaggagccaggagcagaagcctcct
gaggatgatacccagcatctcccatccatggaacacgacagtgctctggctttggctctt
cagcaggaatccaaggaggaagccctggcaagcctggaggatgcaggcttgttcttctgt
cagatctgccagaaggatctcacagccatgaacagcctgcggcgagagcagcacgtcaac
aggtgtctggatgagatggaagaagcacaggtgtcatcctgcagcaaaccagtggtccct
gagtgtcccatctgtgggaagcagttccaaaccccacagagccgagtcagtcacctgaaa
cgctgtgctgtggagatggatgtgcctcccaacctgctgcttcaggcagtgcacctgcag
gtggccactcttggtgatgcagctcttcagtgtcccagcaatcagcccagcagggcaaag
cggaaaggctcctccaacgaggacttgaggaaaacacagaagagggccagaatggagcct
aaggatgaagatttgcaggttgctatggcaatgtcacgctctctgttggagcaagaaaag
caggaacaagcaaaatcagttacaaatgtgaaagcagtggctgctttcccaatcaaatgg
aagccaggatcagagaaaaaaaggcgtaagaaaggcaccaatgcccctccacctctgctg
ctccaggacccggagaaggttcacaagaggatccaggagagagtagccatgatgctgaca
gaagaggtggaattctctcccaccccccagctgcccattagtaggattctagaggatgaa
tctggaaaagcagcctggctcatgccattgtgcaaagccagtaaatgctttttgtggaac
atcagtgctctgacaggaccctgtgaccctgaatcattctacactgcagccttatcccct
ccaattgaaccctggaagcctgtgcagaataagccagagaaccttcagccatcagtggga
tctcctcagccaaaagtatcccagcaaactcagcctgacctcagttctcaggaacccact
tgcacaaaggttggaggccaaacttctgatgaatccaggccaggctctgaaggtgatggg
cagcttctatccccaagccaggacattcagaccctgcaggacctggtggacttggccagg
gagggactcacccttactcagtggaaccttgacactggccatgttcagacagcagagcag
ccaggagaagaagtgacttccagtgatcctccacttagtggctttgtgcccccatccaag
aagaagagcctcctcaggagcagcagtaaaagatcctctctcgggctgctggctcaagat
tttggtgccatggtcaacaacccccacctgagtgatgtccagttccaggtggacagtggg
gaggtcctctatgcccacctgttcgtgctgtacgcgcggtgcccggcggcggctcaggct
gtgcacagcgaggggctgctggtggaggaggatggggctgcgccgacgcgccgggcgctg
ctgagcgatgtgtcagcccaggccgtggctgccttcctgcgctacctctatgctgctgac
accaacttccctgctgggctgcggccccagctgcaggctctggctgccaggtttggtgtg
agggaactgatggcagagtgtgaaagcagcactggagagagccaggtgtcctctggagtg
gattcagaagatgatcttatctctgtgagggatgatgaagagtgtgaggacagagctgag
aacttccaagacctcttgaagtcaatgtgggtgggtgaagatgaggaagaagtagctatg
ctgagccctgagtgccagaaggaggatgacagtgaggtgggagaacaagagctggaggaa
atctatgagtttgctgcaactcagagaaagatggctcagggtgaaagagaggtgagcgag
ggaacagactgcagcatctgcagtgacaccgaggcagttcaaggtacaaaccagcaaact
gagcaggaagaggtaaagagacctgaatctgcttcagtaagcaacagcctcgaagatctg
agggatggcaacggtgtggaaagatctaaatgtgacttgtccgcacaagaagagaagatg
cagaatataaataggtgcaagagcacgaatgatccacagacctctattgtgcctcaccac
actgaacctcagaaatgggagggaacttcccatggtgctaatgaaggaggggctcttggg
ggacgtgaggatgtgaaggattccaggtcacctcaggtctcacatgacaaggcagatcac
tgtgaagagcagtttcctggtttccagggtgatgctgatataaatgacagctatgaacat
ttgttttctgcctctcaggggtatcactgtgagccttccccggtgaaagaagttaccaaa
gaatcaggaaaatcccctagtaaaaaacatgttggtcttaatgattcagttgtgttcagc
aagtcacaaaaagtttgctctccatgtaagaatggattttgtaggagtccaactccccag
ccttatgtgtccctttttcctgctcttggctcttcacctgcatctccaaaatcagaggca
aagtttgccagggaacgtgtgtcaacaccaaagcaaaacaaaaaggaaaagtcattccca
tcttgtgaaatacactcccagaaagccaaggagctgggtgctgcatcaaaaaatgagatc
acagtttctccagcagagctccctcacagtgaatcaaacaagcagacacatgtcccagtg
ttgtcatcaccaggcaggactcaggatgctgcagctcaggggatcaaggagggttatgtt
attgttttatcttctgatgatgatgaaatggagttacaacaaggcaagaagttgccagag
tctgactctgctctgaaggaaatggaggtccctgggcatctgaagtgtacagacatggaa
caaggtcctgagataccaaaacctgaccataactcatcagtccctgatacagagcagaga
tcagcccaggtctcatgtggcaatacagacacactgtgtgtaaggggtgatgtaaaggtg
ttccctgaatttcctctcagcagacaaacaggtgcttgtacagagatcaaacagagtcca
aacctgagccctgggaagaggcttagtaatgaaatgtctccaggcacagacagctcctgg
cttgtgccaggaacaccagttctgagcaaaagcagaagcttctcaacacagactctggtc
acaagtattaattctttaaaaggtccaggatctaaactcagcacaaagaacttagcagca
ggtaatagtaaccatgaaatggctggaaatttaataaaagttcatgaaacaacattgtca
gacaaacatttgcctatggagaacttggccagtggaaggagcccacccagcagcccagca
gcagaatccttttccaataacccccttccagtttctccagtagatccagttctcctctcc
cctggccacaccaacagggaaggcaaatgtgccaatatctcagctttacccaccctggtg
cctctgtgccaggagcagccactggaagataaaatcaacatcagtgtggttgagctggag
gacagtgacagggaagtaagtctgccttctctgggtagcagtgtcctgctgtgtgaggag
cccccactccctgttgatgactgctggcatgttgggtatctgtccccagccagaggtgac
agccatggctccagccaggtcagccatgcaaaggccagcaaggccagcagccccagccct
ggctcttggcaggagcagggggagagcccagtccaggtgcagggaattcagggcagcacc
cctctccaaggaagtcctgctggcaggagaacaactttgcactgccctgagaagagccct
attgagccatgttcatcagtgggcagcagagccagttacctggactccaaaatctgggat
gactggaatggagaagagaaggaagatgaacttccagaaattcttcctttgtctcagagg
ttggcagctgcagcaggggcctgtcagacagatcctgtcaagactcctgaaccttcctgt
caggagaacaggtcccccagcactccagtgacacccatgccagcttattccatcatggag
accccgcagctgaagaaggagctaagcaggttcggtgtccgtgctctcccaaagcgccag
atggtgttgaagctgaaggagatattccagtacactcaccaggatggggactctgacttt
gaggatgaaatctcctattcccagcccctcccccagaagtccccgaggcagccgaaggca
ggccgggctgcgagggctgtgagcaagaggaagcagagtgtcaaggctgatggtgcatcc
catggaacaggctgtgccgcacccaaggacagaactaaagtgacacatcgcccaggagga
gccaaagagcaggaaaggccagctgtgtccctggcagctgatggcgaggagctcccagca
tcccaggagtcagcacgttcctcagtggatggaagtgacatctcctttggttcacagagt
tcctttgtgaatggatttgaaacctgtgcttttacatctgaggaggaggaagaggaattt
ccagcatctcaagcagcagctcgggaagaggagaagctggaggcagtcaggtgctacatc
cgctcaaacacggccctgtacaacaggattctcttctatgaacccatcgagctggctgat
ctgcacgcagagctcaaacagaatggcattaaaatttccaaggcaaagctgctggacttt
ctggattctcagtgcatcacatctaccatggccagagccaggaaagagcaggagcagaaa
aggaaggagagcagaaaacagagaaggcgataccgagtgaagcccacccctcccctctga
DBGET
integrated database retrieval system
