Serinus canaria (common canary): 103818958
Help
Entry
103818958 CDS
T05755
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
scan
Serinus canaria (common canary)
Pathway
scan04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103818958 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scan00536
]
103818958 (COL5A1)
Glycosaminoglycan binding proteins [BR:
scan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103818958 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
103818958
NCBI-ProteinID:
XP_009091615
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDTHTRWKRRSWIRSCSVPAALLLLGALSLGRAAEPADLLKVLDFHNLPDGITKTTGFCT
SRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQ
GIQQIGVELGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVALSVQKKNVTLVLDC
KKKITKFLDRSEHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAALEYCEHYSPD
CDTAIPDSPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPEAPTTKPSPPQVAA
AEKPDTKEDYPAPTAPPERGNPGKQAKEDGAVDDPLVDEYNYETINEEYFTPMPYEDINY
NEEIDPQGGLTENAVEAELPTSTVVTYNETDAAQGGDDLDKDFTEETIKEYDGNYYDSYY
DRTASPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPGP
PGPTGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPMVSAQ
EAQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPGP
AGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDGE
RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPGQ
QGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPGP
QGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGP
EGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRGT
PGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPGP
KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGP
PGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGSPGLKGNEGPPGP
PGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGL
PGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPGP
RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGP
PGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAGP
PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE
PGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI
PGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGD
RGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPGP
PGPPGPPGEVIQPLPIQAAKRTRRNIDASQLLDDGNADNYMDYADGMEEIFGSLNSLKLE
IEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCI
FPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASARQN
ITYNCYQSVAWHDATTNSYDKAIRFLGSNDEEMSYDNNPYIRPALDGCAARKGYQKTILE
INTPKVEQVPIVDIMFNDFGEAAQKFGFEVGPACFLG
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacgcggtggaaaaggcgcagttggatacggagctgctcggtgcccgct
gcgctgctgctcttgggtgccctgtccctcggccgggcagctgaacctgcagacctcctg
aaggtgttagattttcataatttacccgatggtatcacaaaaaccacggggttttgcaca
agcagaagatcctcaaaagaagcagacgttgcttacagagtgacaaaagatgctcagctc
agtgccccaacaaagcagctgtaccctgcttcccccttcccagaggacttctccattcta
accactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgagcaa
gggatccagcaaattggtgtggagttgggtagatctcctgtattcctgtatgaagaccat
acaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagatggc
aagtggcaccgagtggctctgagtgtgcagaagaaaaacgtcaccctggttctggactgc
aaaaagaaaatcaccaagttcctggaccggagcgagcaccccatcatcgacgtcaacggc
atcatcgtcttcggcaccaggatattggatgaggaggtctttgagggtgacatccagcag
ctcctgatcgtggcggacccgcgggcagccctggagtactgtgagcactacagccccgac
tgtgacactgccatccccgactccccccagtcccaggaccccaaccaggatgaatactac
acggacggggagggagaaggtgacacttactactacgagtacccttactacgaggacgtg
gatgaagctgtcaaaccagaagcccccaccaccaaacccagccctccccaggtggctgct
gcagagaaacccgacaccaaggaggattatccagctcccacggcaccccccgagagaggg
aaccccgggaagcaggccaaggaggacggggcagtggatgatcccctggttgatgagtac
aactacgagaccatcaacgaggagtattttactcccatgccctatgaagatatcaactac
aacgaggaaatcgatccccagggtggcctcactgaaaatgcagtggaagctgaactcccc
acgagcactgtcgtcacctacaatgagactgatgctgctcagggaggagatgacctggat
aaagatttcactgaggaaaccataaaggaatatgatgggaattattatgacagctactac
gaccggacagcctctcctgacatcggcccaggcatgccagccaaccaggacaccatctac
gaagggattggtggccctcggggtgagaaggggcagaagggggagcctgccatcattgag
ccgggcatgctggtggaaggcccccctggtcctgaaggcccagcaggccttccaggacct
ccaggacccactggacccgtgggcttgatgggtgacccaggggagaggggcccacctgga
cgcccaggtctcccaggagcagatggactgccaggaccaccagggacgatgctgatgctg
cctttccgcttcagcggcggaggcgacgctggctccaagggccccatggtgtcagcccag
gaggcacaagcccaggccatcctgcagcaggccaggctggcactgaggggaccagcggga
cccatgggcctgacagggcggccgggcccgatgggacccccgggcagcggaggactgaag
ggagaagctggagaaatgggacctcagggtccacgaggcatccaaggtcctcccggtcct
gcagggaagccaggccgcaggggacgagccggcagtgacggcgcccggggcatgccaggc
cagacaggacccaagggtgaccgaggctttgatggcttggcgggtttgcctggtgagaag
ggaaacaggggtgagccaggtccccacggccccccaggggctcctggagaggatggggag
aggggagatgatggagaagttggacccagaggtctccctggagaacctggaccccgagga
ctgctgggccccaagggacccccaggacccccggggccaccgggtgtggctggcatggat
ggacagacaggtcccaaagggaatgtgggcccccagggcgagccagggcccccaggacag
caggggaacccaggggctcagggtcttccaggtccacaaggcgccatcggtcccccagga
gagaaaggcccattgggcaaacctggtctccctggcatgcctggtgctgatgggcccccg
ggtcaccctggcaaggaaggtcctcctggagagaagggcagccagggtcccccaggtcct
cagggccccattggatacccaggaccacgtggagtcaagggagcagatggagttcgtggc
ttgaaaggcaccaagggggagaagggtgaagatggtttccctggcttcaaaggtgacatg
ggcatcaaaggagaccggggggaaattggcccccctggcccccggggtgaggatgggccc
gaaggccccaaaggtcgctctggccccaatggagatccaggtccccttggtcctgctgga
gagaagggaaaactcggcgtgccaggactgcctggatacccgggcaggcagggccccaag
ggctccatcggattcccaggattcccaggagccaacggagagaagggcacacggggcact
cctggcaaaccaggtcccaggggacagcgtggccccacaggtccacgtggggaaagaggc
cccaggggaagcactggaaaacctggcccgaagggcaactctggtggtgatggcccccct
ggtcctcctggagaaaggggaccaccagggcctcagggaccaactggatttcctggacca
aaaggtccccctggccctcctgggaaggatggattgcctgggcaccctggccagagagga
gaaactggtttccaaggcaagactggccctccaggcccccctggtgtcgtagggcctcag
ggcccaactggtgagactggacccatgggtgagcgaggccacccaggccctccaggtccc
ccgggagaacaaggtctccctggcctcactgggaaagaagggaccaagggggatccgggt
cctgctggcctcccggggaaggacgggccccctggactgagaggcttccctggagaacga
ggcctccccggccccattggctctccagggctgaaaggcaacgaaggtcccccaggccct
ccaggcccagccggctctcctggggaacgtggccctgcaggatcagctggccccatagga
ttgccaggcagacctggccctcagggacctccaggacctgcaggtgaaaagggagctcca
ggggagaaaggtccccaaggaccggctggccgggatggcatccagggccccgtgggactg
ccgggcccggcaggtcctgttggacctcctggagaggatggagacaagggtgagatcggg
gagcctgggcagaagggcagcaaaggtgacaagggggagcagggtcccccaggccccaca
ggtccccagggcccaattggccagcctggcccagctggagctgatggagagcccgggccc
cgaggacagcaaggtctctttgggcagaaaggggatgaaggaccccgaggtttccctggt
ccccctggccctgtgggcttgcagggcctgcctggaccacctggggagaagggagaaacg
ggtgacgtcgggcagatgggcccaccaggcccaccaggacccagaggtccatctgggcca
ccaggagcagacggtccacagggtcctcctggaggaataggcaatcctggtgcagtagga
gagaagggtgaacctggggaatctggtgagcctggtctccctggagaggtcggcctgcct
ggccctaaaggtgaaagaggtgaaaagggggaagcaggtccctctggtgctgctggtcca
cctggccccaaaggcccaccaggtgatgatggccccaaaggcagccctggtccagttggt
ttccctggtgaccctggtcctcctggagagcctggcccagctggtcaagatggtccccct
ggtgacaaaggtgatgatggtgaacctggacagactggttcccctggacccacaggagag
ccaggcccctctggaccccctggaaaaaggggccctcctggtccagctggtcctgaagga
aggcaaggagagaaaggagccaagggggaagctggtttggaaggacctcctgggaagact
ggacccattggtccccaaggtgctccagggaagcctggccccgatggcctccgtgggatc
cctggcccagttggtgaacaaggtctcccgggatcccctggcccagatggtcctccaggc
ccaatgggccctccgggtttgcctggtctgaagggagactctggtcctaaaggggagaag
ggtcacccaggtttaattggtctcattgggccaccaggagagcagggagaaaagggtgac
agaggcctcccagggccccagggctcagcaggacccaaaggagagcagggtatcacaggt
ccctccggacccatcggacctccagggcccccaggattgccgggtccacctggtcccaaa
ggtgctaaaggctcctcaggtcccacaggtccaaagggtgaatctggccttcctgggccc
ccagggcctcctggtcctcctggagaagtcatccagcccctgcccatccaggctgccaag
aggaccaggaggaacattgatgccagccagctgctggatgatggcaatgctgacaactac
atggactatgctgatggcatggaggagatttttggctccctgaactccttgaaactggaa
atcgagcagatgaagcatcccttgggcactcagcacaacccagctcgcacctgcaaggac
ctgcagctctgccaccctgatttcccagatggtgaatactgggtggatcccaaccagggg
tgttccagggactccttcaaagtttactgcaatttcacagctgggggagagacctgcatc
ttccctgataagaaatctgaaggagctagaattacttcctggcccaaggaaaacccaggc
tcgtggttcagtgaattcaagcgcggtaaactgctctcctacgtggactcggacgggaac
cccatcggggtggtgcagatgaccttcctgcgtctcctgagcgcctcggcccgccagaac
atcacctacaactgctaccagtcggtggcctggcacgatgccaccaccaacagctacgac
aaggccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccctac
atccgacctgccctggatggctgcgcggcgaggaagggctaccagaaaaccatcctggaa
atcaacacgcccaaagtggagcaggtgcccatagtcgacatcatgttcaatgacttcgga
gaagcggcacagaaatttggattcgaggtgggaccagcttgcttcctgggctaa
DBGET
integrated database retrieval system
