Serinus canaria (common canary): 103819072
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Entry
103819072 CDS
T05755
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
scan
Serinus canaria (common canary)
Pathway
scan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103819072 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scan03041
]
103819072 (PRPF4)
Spliceosome [BR:
scan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
103819072 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD_LRWD1
WD40_like
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
103819072
NCBI-ProteinID:
XP_009091777
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MATARAPAARGGARPPEPPKAKAAEEAEAPPAKRGPIFYGSLEEKERERLAKGEAGLLGK
EGMKAAMEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDCEVKACLR
ALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTWYHEGPRS
LKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRP
LSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATVSLDKKD
VSLASCAADGSVKLWNLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLE
AQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGI
NFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFEPNHGNFLLTGAYDNT
AKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgcgggcaccggcggcccgcggcggggcccggccccccgagccccccaag
gccaaggctgccgaggaggccgaggctcccccggccaagcgggggcccatcttctacggg
agcctggaggagaaagagcgggagcgcctggccaagggcgaggccgggctgctgggcaag
gagggcatgaaggctgccatggaggctggcaacatcaacatcagcagtggggaggtgttt
gacctcgaggaccacatgagcgagcggcaggcggaggtgctggcggagtttgagcgccgc
aagcgcgcgcggcagatcaacgtgtccacggacgactgcgaggtcaaggcgtgcctgagg
gccctgggagagcccatcacgctcttcggagagggccctgcggagcgcagggagaggtta
agaaacatcctctcagtggttggtacagacgcattaaaaaagaccaggaaagatgatgac
aggtccaaaaagtccaaagaagagtatcagcaaacctggtaccacgagggcccacgcagt
ctgaaaacagccaggctgtggctggccaactactccctccccagggcagcgaagcggctg
gaggaggcccggctgctcaaggagatccccgaggccacccggacatcccagaggcaggag
ctgcacaaatccctgcggtccttgaataacttctgcagccagattggggacgatcgccca
ctgtcctactgccacttcagccccaattccaaactgctggccacggcctgctggagtggg
ctgtgcaagctctggtctgtgcctgactgcaacctggttcacaccttacgaggacacagc
accaacgtaggggcaattgtgttccaccccaaggccacagtgtccctggacaagaaggat
gtgagcctggcctcgtgtgcagctgatggctctgtcaaactctggaacctggaaagtgat
gagccggtggcagacatcgagggacacagcatgagagtggcccgtgtgatgtggcacccc
tcagggaggttcctgggcaccacctgctacgaccactcgtggcgcctgtgggacctggag
gcgcaggaggagatcctgcaccaggaggggcacagcaagggcgtctacgacatcgccttc
cacaccgacggctctctcgccggcaccggaggcctggatgcctttggccgggtgtgggat
ctgcgcacaggccgctgtatcatgttcctggaagggcacctgaaggagatctacgggatc
aacttctccccaaacgggtaccacgtggccacgggcagtggggacaacacctgcaaggtg
tgggacctgcggcagaggaagtgcatctacaccatccctgcccaccagaacctggtcact
ggcgtcaggtttgaacccaaccacgggaatttcctgctcacgggtgcctacgacaacacg
gccaagatctggacccaccctggctggtcccccctgaagacactggcggggcacgagggg
aaggtgatgggcctggacatctccctggatgggcagctcattgccacctgctcctacgac
agaaccttcaagctctggacagctgagtag
DBGET
integrated database retrieval system
