Serinus canaria (common canary): 103819264
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Entry
103819264 CDS
T05755
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
scan
Serinus canaria (common canary)
Pathway
scan03008
Ribosome biogenesis in eukaryotes
scan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103819264 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
103819264 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scan03021
]
103819264 (XRN2)
03019 Messenger RNA biogenesis [BR:
scan03019
]
103819264 (XRN2)
03009 Ribosome biogenesis [BR:
scan03009
]
103819264 (XRN2)
03016 Transfer RNA biogenesis [BR:
scan03016
]
103819264 (XRN2)
Transcription machinery [BR:
scan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103819264 (XRN2)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103819264 (XRN2)
Ribosome biogenesis [BR:
scan03009
]
Eukaryotic type
Pre-60S particles
RNases
103819264 (XRN2)
Transfer RNA biogenesis [BR:
scan03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103819264 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
103819264
NCBI-ProteinID:
XP_009091990
UniProt:
A0A8C9UGQ2
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCIEEKVKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPVSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHERQNSTTSASPNTSL
TPDSSPSLGGGIKRKPEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEAVDIPPELCHGIQG
KLTLNDNAVLPDQVVQSPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRDRGMPGMYPNAVPLG
AYGSPYARPLMGSQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRVMQSP
NQFQPAQYQGLGPMGYPQRPEDRMDRGRQAYGPGRPYPLPPPAGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcatcgaggagaaggtcaaagagtgcaatggtgtcaaggtccccattgacacaagcaag
cccaaccccaacgaggtggagttcgacaacctctacctggacatgaatggcatcatccac
ccctgcacacacccagaggacaagccggcgcccaaaaatgaagatgagatgatggtggca
atttttgagtatatcgacaggatcttcaacattgtgagaccaaggagactcctttacatg
gccatagatggagtggccccacgtgccaaaatgaatcaacagcggtccaggagattcaga
gcctcaaaggagggcatggaagctgctgaggagaagcaaaaaatccgacaagaaattctg
gccaaaggtggctttctgcctccagaggaggtgaaggagaggtttgacagcaactgtatc
accccgggaactgagtttatggacaatcttgctaaatgcctccgctattacatcgctgac
cgcttgaacagcgacccaggctggaagaacctgacagttattttgtcagatgccagtgct
cctggtgaaggggagcataaaatcatggattacatcaggagacaaagagctcaacccaac
cacgacccaaacactcaccactgtctgtgtggggctgatgctgatctgatcatgcttggc
ttagctacacatgaaccaaacttcaccatcattagggaagagttcaaaccaaacaaaccc
aagccttgtgctctctgtaaccagatggggcatgaggttaaggattgccaaggtctgccc
agagagaaacaaggaaagcacgatcagtttgccgactccctgccggtctcagagcaagag
ttcatcttcatccgcctgtgtgtcctgcgagagtacttggagagagagctcaccatggcc
agcttgcctttcacttttgattttgaaaggagtgttgatgactgggtcttcatgtgcttc
tttgtggggaatgatttcctccctcatctgccatctctggagatcagggagggagcaatc
gatcgcttggtgaacatctataaaaacgtggtgcacaaaaccgggggctacctgactgag
agtgggttcgtgaacctgcagcgagtccagatgatcatgctggctgttggggaagttgaa
gacagtattttcaaaaagaggaaagatgacgatgataactttaaaagacgacaaaaagaa
aaaaggaagagattgaagagggatcagccttcctttattcctggtggtcagttttcccct
caagccctgggaaatcgatccagccctcaggcaatctgtaaccctcgacaagctgccttt
gagatgaggatgcacgagaggcagaactcgacaacttcagcatctccaaacaccagcctg
actcctgacagcagcccgtccctgggaggaggaattaagcggaaacctgaggacagtgac
agtgaacctgagccagaggataatatcaggttgtgggaaactggctggaagcagcgctac
tataaaaacaaatttgatgtggacgcgtcagatgagaaattccgccgcaaggttgtgcag
tcctacgtggaagggctttgctgggttctcagatattattatcagggctgtgcatcctgg
aactggtattaccctttccactacgctccctttgcctcggacttcgagggcattgcagac
atgccttcagactttgagaagggctccaaaccgttcaagcctcttgagcagctgatggga
gtgttcccggccgccagtggaaacttcctgccgccaacgtggaggaaactcatgacagac
ccagaatcaagcatcattgacttctatcctgaagattttgctattgatttgaatgggaag
aagtatgcttggcaaggtgtggcattgttgccctttgtggatgagcgacgcctcagagct
gccctggaggaagtgtaccctgacctcacacctgaagagagcaggaggaacagccttggc
ggtgatgttctctttgttgggaagcaccatccactctgtgacttcatcgtggagcagtac
aagaccaagaacacagaggcagtggacatcccaccggagctgtgccacggcatccaggga
aagctcaccctgaacgacaacgccgtcctgccggatcaggtggtgcagtctcctgttccc
atgctgcgggatctgacacagaactctgcagtcagcatctcattcaaagatccacaattt
gctgaagactttgttttcaaggccacagtgttacctggggcaaagaaacctgctccagtt
ctgaagccaggagactgggaaaaaaccaacaatgatggcaggccttggagaccacagctt
ggctttaacagggacaggaaaccagtgcatttggaccagtcagcattcagaaccttgggg
cacacaatgccaagggacaggggcatgccagggatgtaccccaacgctgtgccactcgga
gcctatggcagcccctacgccaggcccctcatgggcagccagcagcagatccccaaactg
ctgtcaaatcttcggccccaggagtcctggagaggtcccacacccttgttccagcagaca
cctcaaagaaccgccggagccgctcctctcctcgcctggaaccgcgtgatgcagtcccca
aaccagttccagccagctcagtaccaggggctggggcccatgggatacccccagagaccc
gaggaccgcatggacaggggcagacaggcgtacggccccgggaggccctacccgctccca
cctcccgcaggaaggtacagctggaattag
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