Serinus canaria (common canary): 103819434
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Entry
103819434 CDS
T05755
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
scan
Serinus canaria (common canary)
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scan04131
]
103819434 (VPS13A)
Membrane trafficking [BR:
scan04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
103819434 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
DUF5764
RRM_fung
Motif
Other DBs
NCBI-GeneID:
103819434
NCBI-ProteinID:
XP_030093108
LinkDB
All DBs
Position
Unknown
AA seq
3208 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HISQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTATIKYDAEKEARQLLEARQRELQRIEE
AKQKIADRDKVKVEKQDTFVEKLVTQVIKNLQLKISNIHIRYEDDITNRDNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFHKLVRLDNLFAYWNVKSEMFYHGRLDESLVNLKQGVA
SHNVIPDGYDFVFRPISAKAKLLMNPRSDVDFSSPKIDLNVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPVHNNAKIWWKYVIDGVLKVNVQPKLQMWSWEHISHHRK
QVKNYKELYKTKITSKKPSEEILKLLEEFEKVLDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWGWSGRKKDEKAQEVKGSSLEQLMTQEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVSLLSMSISIRENQQTPKLIEFALTDLSTIFTQRPGAQAIRFETKITS
LEVTGVSQEKCTPRLLSSRTVYSDDGTSLLSIMFETNPLDEKADQRIRIESQPLEIVYDA
MTVNNLVDFFRPPKDVHLEQLTSATLLKLEEFREKTSTGLLYIIQTQKVLDLKINLMASY
IIVPQKGFYDHTSNLLLLDLGSFKMASKSRSDLSEIKVGQTSIEDIMSRAYDSFDVQLSS
MQLLYSKHDENWQEARKLKNSSQCILQPLDVNLEFSRAMVVTDARMPRFKLSGQLPLLSI
QISDQKVTSILELIDSIPKPESAPATSSPPKMTEATLSPVLPAPHSSQGVYPVLDLHSFA
ESESEEEFYDALSSPVEDMPFFEVSPDFFNQALSTRRKNLHKQESLKNMTDFQLKFEVAE
VLIKLCRLTGGTEMPVLQLDILGLGTELKVRTFDMTGSAFLREVGLLCPEYIDDNDKPVY
IITTLDNVEDDLLTLEYTKTDIKGPELKTVCQNVLQKIKVNFSSLDVHLHTEALLNAMNY
LNNLLPKQETKVVEEPVYEKTEEKKDVLKKLTSKKSKYEDIIDLIICADLSCLRIFIREK
NRRIAEIHIEGLDSQVIMKKAATDVTAKLKNISIVDSDEKALYKKALYITEKEVFNFRMV
SYVDATDGIAYTNMDVVDNRIYLTVGCIQVVFVNKFVSSVLAFINNFQAAKEAFTEATVR
TAEKAATGVKGLAERSSRLALDINIKAPVVIIPQSAMSANVLVADLGLITVKNQFFIAKT
KARCSLPPVIDSMTVKLSELKLYRSYYEQDSLQTEVQLLQPVNLEVAVERNLAAAWYNEV
PDIEISGRLKPMNLILSQEDITTILRTLNENAGESSSASTALPESKASASHTSEMHGTSQ
HSAGVTVVTSAVVELHSPMKIKTTLKLDFRFDSLTLVLYSPNLKQVNSLDQRDDLLKLAE
FKLVLMSAALKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDVNY
KQGRDGTVLDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSVPVKDQASVQP
VSTMEMNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYSMTAAVREIQMKAC
PFLPEERKGNITTVLQPCDFFFEMKQSGTNPQTADLTIKSLTIEVSPIIINTVLTITSAL
YQTTETTKEEISEIPPDLWNKKDLKNLKMWFLEETNENEDKNPNTELIPTGESLKLNVES
VFITLEAGVGHRTVPMLLAKSSFVGEVKNWSTLINLHSRLELEVHYFNEMFGVWEPLLEP
LEVEKTDLFKPWTLEIKMKKAKKALFESDDEEEENYKIPEYKTVINVSSKDQLNITLSKL
GLQMLNNLGTAFAEAASQTSDIFKKERAPFVIINSLGVPITVSPSDSFSVLNVEFGSKIF
HLEDKESLNMDFVRSRNESDQFTAMTTLSSKRFYIQICPHNHSAVEKIPLTKVGRCIYKV
RHEESGVERSIVSQIDTVEGSKMITIRSPIQIRNHFSIPLNVFEEGRCLGTASPANEFNI
PFSSYRSILSLQPLANENGVGGEYDMCEGITFDEIMKNVGSLLQRKCQSVKSTNHSLIIN
IVPVKDALTTSLGAEDEWDFPYVVHLWPSVLLRNLLPYQITYSVEGNGNKYNALQEGCSA
QIHNAVLDQTKLDLQLLNYLDQDWRSEYHIKSNLPEISFTTFQCITELDKTELDIAVHVT
YTTGQMIIEIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQL
RVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRS
KYTLEVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPENDANKLLVRVENSDLPPKK
INFDQQENCLLLHLDNKLGGIAVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYG
QSSLSELEDCLQPNKAVLYTWADPTGSRKLKWRCGNRTEEIAAKEDKMEVLSVDSRKVVY
LMSFYEGLQHIVLFTEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYI
GITSSDVVWETKPKKKSRWRPMSVKQIDKLEQEFRDYSELSPSENKIIELESNVLVCLTP
NGMNMTIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYP
IKPPKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYAIGEFF
SQTDVPSDQELQLFEKDVESLQEELMSVSSMDTSQISVYEYFHISPIKLHLSFSLSTGGE
DSNKEERKNELIPFQSLNLLLKSIGATLTDVQDIVFKLAFFELRYHFGTPQQLQSAVIKH
YSKQAIKQMYILILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLK
ALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGL
VSGFVSGITGIVTKPIRGAQEEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKV
ADSSEDVVSLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDL
LMVTKSGVLFVTKGAFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFG
KIINFRSPEDAKWILSKLEEVRESQPKL
NT seq
9627 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcgctggtcgtggacgtcctgaaccgtttccttggcgactacgtggtg
aacctggacagctcccagctgaagctgggcatctggggaggagctgtagcactgaaaaat
ctggaaataaaagaaaatgcactgagtcagttggatgtgccatttaaagttaaagcagga
catattagtcaacttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagtccttgatggagtttatttgcttattgtgcccacagccaccataaaatatgatgct
gaaaaagaagccaggcaactcttggaagcaagacaaagggaattgcagagaatagaagaa
gcaaagcagaagatagctgaccgagataaagtaaaagtagagaaacaagacacttttgta
gaaaagctggttactcaggtcatcaaaaatcttcagctgaaaatttccaacatccatatt
cgctatgaagatgatattacaaatcgtgataaccccttgtcatttgggatttcacttcag
aatctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcc
aagttgttccacaagcttgtgcgactggataacctttttgcttattggaatgtgaaatca
gagatgttctaccatggtcgtttggatgaatcattggttaacttaaaacagggagttgcc
agccacaacgtgattccagatggttatgattttgtattccgcccaatttcagctaaagcc
aagctccttatgaatcctcgatctgatgttgacttttcatcaccgaaaatagacctaaat
gtaaacttacaggatataactgttgaattcaataagccacagtacttcagcgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccataccggaagtacagacctgat
gttccagtgcacaacaacgcaaagatatggtggaaatatgttattgatggcgttcttaaa
gtaaatgttcaacctaaactccagatgtggtcatgggaacatatttcacatcataggaag
caagtgaagaactataaagagttgtataaaacaaagataacatcaaaaaaacctagtgaa
gaaatcttaaaattgttggaggaatttgaaaaggtcttggatatttttaacatcacttta
gcaaggcaacaagcagaagttgaggcaactaaggctggattgaaaatctacaggccagga
gtaaaacaagatgatgaaaattctggtggctggtttagctggatatggggctggtcaggt
cgaaaaaaggatgaaaaagcccaagaagtaaagggttcaagtcttgaacagctgatgact
caggaagagaaggctaaactttatgcagcaattggatatagtgaaacagctgtggatcca
acccttccaaaatcatatgaagccatgaagttctctgtgtccttattaagcatgtcgata
tcaataagagaaaaccagcaaactcctaagctaatagaatttgcattaactgacttgagt
acaatatttacccaacgaccaggtgcacaagcaataaggtttgaaacaaaaattacctca
cttgaagttacaggcgtgtctcaagaaaagtgtacaccccgtctcctgtcttctcgaaca
gtctattcagatgacggtacctcacttttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagaggatcagaatagaatcacaaccactggaaatagtatatgatgct
atgacagtaaataacttagtggattttttcagacctccgaaagacgtacatttagagcaa
ttgacatcagcaactctgttgaagcttgaagaattccgtgaaaaaacatcgacaggtttg
ttgtatattattcaaacccagaaagttcttgacctcaaaataaacctcatggcttcatac
atcattgttccacaaaaaggattctatgaccatacatcaaatttactgcttctggatctt
ggtagctttaaaatggcaagcaaaagtcggtctgatttatcagaaatcaaagtagggcaa
acctctattgaagatataatgtccagagcttatgacagttttgatgtccagctcagtagc
atgcagttactttacagcaaacatgatgagaactggcaagaagctcggaagctgaaaaac
tcatctcagtgtatcttgcagcccttggatgtaaatctggaatttagcagggctatggtt
gttacagatgcaagaatgcccaggttcaaactgtcaggacagttgcctttactttctatc
caaatatcagaccagaaggtgacaagtatcttggagctaattgatagcattcctaagcca
gaaagtgcacctgctaccagttctcctccaaaaatgaccgaggctacactgtcccctgtc
cttccagcaccacattcatctcaaggcgtgtatcctgttttggatcttcattcattcgct
gagtcagaatcagaagaagaattttatgatgcactaagcagtcctgtggaagatatgcca
ttttttgaagtctcgcctgacttcttcaatcaggctcttagtacaaggcgaaaaaaccta
cacaaacaagaatctctgaaaaatatgacagatttccagctaaagtttgaagtagctgag
gtcttaattaaattatgccgtcttactggtggtactgagatgcctgtgctccagcttgat
attttgggcttaggcactgaacttaaagtgagaacatttgacatgactggaagtgctttc
cttcgtgaagttggtcttctgtgcccagagtatattgatgataatgacaaaccagtttac
ataattactacattggataatgtagaagatgatcttctcactctggaatatacaaagact
gatattaagggaccagaactgaaaactgtctgtcagaatgttctacagaaaataaaggtg
aacttttcttctctagatgttcatttgcatactgaagctctgctgaatgctatgaactat
ctgaataatcttctgcctaaacaagaaaccaaagttgtggaagaaccagtctatgaaaaa
acagaagagaagaaggatgttcttaaaaaattaacatcaaaaaaatcaaagtatgaagat
attattgacctcattatctgtgcggatttatcatgtttgcgtatttttatcagagagaaa
aaccgtagaatagctgaaattcacattgaaggtctggatagccaagtgatcatgaagaaa
gcagcaactgatgtgactgcaaaattgaagaacatcagtattgtggattctgatgagaaa
gccttgtataaaaaggctctttacatcacagaaaaagaagtcttcaacttcagaatggta
tcatatgtggatgctacagatggcattgcatatacaaatatggatgttgttgacaatcgt
atttacctaactgttgggtgtattcaagtagtttttgtcaacaagtttgtttcatctgtt
ttggcttttataaataactttcaagctgctaaggaagcttttactgaggcaactgttcga
acagcagagaaagcagctacaggtgtaaaagggttagcagagcgtagttcccgtttggcg
ctggatatcaatatcaaggcacctgttgtgataattccacagtcagcaatgtctgcaaat
gtcctggtggctgatcttggtctaatcactgtgaagaaccaattctttattgctaaaaca
aaagcacggtgtagtcttccacctgttattgactctatgacggtgaaattgagtgaactg
aagttatacagatcttactatgagcaagattctttgcaaactgaagtacagttgctgcag
ccagtcaatctggaagtagctgttgaacgaaatttagctgctgcgtggtataatgaagtt
cctgatattgaaatatctggccgactcaagcctatgaatctcattctcagtcaggaagat
attaccacaatactgaggacactaaatgaaaatgcaggtgaaagctccagtgcatcaaca
gctttgccagaatcaaaagcatcagctagtcatactagtgaaatgcatggtacttctcag
cactctgcaggtgtaactgttgtgacatcagctgtggtggaattgcattcacctatgaaa
ataaaaacaacactaaaactggacttcagatttgactctctgactttagtgttgtatagt
ccaaatttgaaacaggttaacagtttggatcagagagatgatcttttgaagcttgcagag
tttaaattagttctcatgtcagctgctctgaaaatgttatcagatggttcaatgaatgct
tcagtcaaactggcaaactgtacattagatgataaaagacagtccatccagaaggctaca
ccaagaatggtggaaatgaaacatggatttgaaaagaaagttatggtggatgtaaactac
aaacaggggagagatggcactgttcttgatgttattgttcaagagatatacctttgtgca
agcatggagttcctacttactgtagcagatatatttctaaaggctaatgcagaaagtgct
gctgcacaaagaaatctcaaacagtcagtacctgtaaaggaccaagcatctgtgcagcct
gtatctacaatggaaatgaacattgttgttaaaaatccagagattgtatttgtggctgat
ttaacaagaagtgatgctcctgcattggtggttacaacacagtgcgaggtcttcattaaa
aatagccctgaaaggtacagcatgacagctgctgttagagaaatacagatgaaagcatgc
ccatttcttccagaggaaaggaaagggaacattactacggtattgcagccttgtgacttc
ttctttgaaatgaaacagtcaggtactaatccgcagacagctgatctaaccattaaatct
ctaacaatagaagtttcaccaataatcataaacacagtacttactattacatcagccctt
tatcaaactacagaaacaacaaaagaagagattagtgaaattcctcctgacttgtggaat
aagaaagatttaaaaaatctgaaaatgtggtttcttgaagagactaatgaaaatgaagac
aaaaatcctaacactgaattgattcccactggagagtcattgaaacttaatgtagaatct
gtttttataacacttgaagctggggttgggcacagaacagtgccaatgcttttagccaag
tcctcatttgttggagaagtcaagaactggagtactctaatcaacctacattctcgtctt
gagctagaggtacattattttaatgagatgtttggcgtgtgggaacctttgcttgaacca
ttagaagttgagaagactgacttattcaagccatggactcttgaaatcaagatgaagaag
gctaaaaaagcgctgtttgaatcagatgatgaagaagaagagaactacaaaattccagaa
tataaaacagtaataaatgtttcctcaaaggaccagctcaacattacactgtccaagtta
ggactgcaaatgttgaataacttgggcacggcatttgctgaagcagctagtcaaacttca
gacatcttcaaaaaagaacgagcaccatttgtaataataaattctttgggagttcccatc
acggtctcacctagtgattcctttagtgtccttaatgttgaatttggatcaaaaatattt
catttagaagacaaagagagtttaaatatggattttgtcagaagtagaaatgagagtgac
cagttcacagcaatgacaacactgagtagcaagagattttacattcagatatgtccacat
aatcattctgctgtggaaaagattccgttgactaaagtgggtcgatgtatttacaaagtg
cgacacgaggaatcaggtgttgaaaggtccatcgtcagtcaaattgatactgttgaagga
agcaagatgataactatacgttcccctattcagataaggaatcacttttcaatcccttta
aatgtttttgaagaaggaagatgtttaggcactgcttcaccagcaaatgaattcaacata
cccttttcctcttacagatccatactgagtttgcaaccactagccaatgaaaacggagtg
ggtggagaatatgatatgtgtgaaggaataacttttgatgaaattatgaaaaatgttggc
agtttattacaaaggaaatgccaatctgtgaagtcaactaaccactcacttatcatcaat
attgttcctgtaaaagatgcattgaccacttcattaggtgcagaagatgaatgggatttt
ccatatgttgttcatttatggccttctgttcttctccgcaatcttcttccttaccaaata
acttactcagtagagggaaatgggaacaaatacaacgctctacaagaaggatgttctgcc
cagattcataatgcagtcttggaccaaacaaaactagatttgcagttgcttaactatctt
gatcaagactggagaagcgagtaccacataaaaagcaatctgcctgaaatcagcttcacg
acatttcagtgtatcacagagttggataagactgagctggatattgctgttcatgtgacc
tacacaactgggcagatgataatagaaattcacagtccctactggatggtgaataaaact
ggtcgaatgttacaatacaaagcggatggtattcaccgcaagcatcctccagattacaaa
aagcccctccttttttctttccagcctaaaaacttccttcaaaataacaaggtgcagctt
cgggtaactgacagtgaactgtctgatcagttttcactggacactgttggaagtcatggt
tctgtgaaatgcaagagtcataaaaaggaatatcaagttggcgtcaccataaacaatagc
agtttcaatattactagaattgtaaccttcactccattttttatgatttcaaatagaagt
aaatacactttggaagtagctgaagagggcaaggaaaagtggattcccattgttttgcaa
cagtggtgtgagaaacaatgggaaagggaacttagtggcatgtgcattcccttttggcct
gaaaatgatgccaacaaactgcttgttagagttgaaaattctgatctccctccaaagaag
ataaattttgatcagcaagaaaactgtcttttactacatttggacaataagcttggagga
attgcagtggatgttaatctgactgaacattctacggtgattaccttttctaattaccat
gatggtgcagctccatttctgttgataaaccataccaaagaggaaattattgagtacgga
caaagctccctcagtgaattggaagactgccttcagccaaacaaggcagtgttgtacact
tgggcagacccaacaggatctaggaaattaaaatggaggtgtggaaatagaaccgaggaa
attgctgcaaaagaggacaaaatggaagtactcagtgtggattctagaaaagtggtgtat
ttaatgtcgttttatgaaggtttgcagcatattgtcctgttcactgaagatgagaatgta
tttaaattgacctatgaaagtgtaaaagcagaactagcagaacaagaaattgttctgtct
ttgcaagatgttggaatttcattggttaataattatacaaaacaagaggtgtcctacatt
ggaattacaagttctgatgtggtgtgggagacaaaacccaagaagaagtcaagatggaga
ccaatgagtgttaagcaaattgataaattagagcaagaattcagagattacagtgagcta
agcccttcagaaaataagattattgagttggaatcaaatgttttggtatgtttaactcct
aatggaatgaacatgacgattcaacagccaaatgagattcctatcagaagaaattatctg
ccagctttaaaagtggaatacagttcctctgcacatcagaagtctttcagaattcaaatt
tacaggatacaaatacaaaaccagattcctggagccatatttccctttgtgttctatcct
attaaacctccaaagtccatcaccttggattcagcaccaaaaccatttactgatgtcagt
attgtcatgagaactgcaggacactcacagatatctcatattaagtattttaaggttctg
attcaagagatggatctcagattagatcttggcttcctgtatgcaattggtgaattcttt
tcacagactgatgtgccaagtgaccaagagctacaactttttgaaaaggatgttgaatct
cttcaagaagaactaatgagtgtgtcatcaatggatacgtcacagatcagcgtgtatgaa
tacttccatatctctccaattaagttacacttgagcttttcactcagtacgggtggagaa
gatagtaacaaagaagaaagaaagaatgaactgataccatttcagtccttgaatctcctg
ctgaagagcataggggccacccttacagatgtacaagatattgtcttcaagttggcattc
tttgaactcaggtatcacttcggtactccacagcagcttcaatcagcagttataaagcat
tattcaaaacaggctattaaacagatgtatattcttattcttggccttgatgtgttgggt
aatccatttggattcataagaggcttgtctgaaggagtagaagcttttttctatgaacca
tatcagggagccattcagggtcctgaagaatttatagagggaatggcactaggacttaaa
gcactggtagggggagctgttggtggattagcaggagctgcctcaagaatcacaggtgcc
atggcaaaaggagtagctgcaataactatggatgaagattaccagcaaaaaaggagagaa
gccatgaataaacaacccactggtctgagagagggtatcactcgtggtggaaaaggacta
gtttctggttttgtcagtggcataacaggaatagttacaaaaccaataagaggagctcag
gaagaaggagcagccggttttttcaaaggtgttggaaaaggcttagttggagcagtagct
agacccactggtggaatcatagatatggcaagcagcacatttcagggtattaaaaaggtt
gcagattcatcagaagatgtggtaagcctgagaccacctcgcttctttggtgaagatggc
gttattagaccttacagattaagagatggaactggaagtcaaatgttacagaaaattgaa
aatggaagatttgcaaaactcagatatattgcacatgctatggtcaacagtacagatctg
ttaatggtaacaaaaagtggtgtgttatttgtgacaaaaggggcgtttggacagctgacg
tgtgaatggcaatacacttatgatgaatttaccaaagaaccattcatcgttgatggtcga
agattgcgcattgaagccaaggaacgagttaagtctgtcttccatgccaaagaatttgga
aaaattattaattttagaagtccagaggatgctaagtggatcctttccaaactagaagaa
gtacgagagagtcagccaaaattgtaa
DBGET
integrated database retrieval system
