Serinus canaria (common canary): 103821050
Help
Entry
103821050 CDS
T05755
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
scan
Serinus canaria (common canary)
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scan03021
]
103821050 (CHD1)
03036 Chromosome and associated proteins [BR:
scan03036
]
103821050 (CHD1)
Transcription machinery [BR:
scan03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103821050 (CHD1)
Chromosome and associated proteins [BR:
scan03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
103821050 (CHD1)
SLIK complex
103821050 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
103821050
NCBI-ProteinID:
XP_030093226
LinkDB
All DBs
Position
Unknown
AA seq
1809 aa
AA seq
DB search
MNGHSDEESVGNSSGESSRSDDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
QSESESDTSREKKQIQSKPPKVDGSEFWKSSPSILAVQRSGVLKKQQQQKAASSDSVSEE
DSSSSEDSADDSSSETKKKTHKDEDWQMSGSGSMSGTGSDSESEEDREKSSCEESESDYE
PKNKVKSRKPPTRIKPKSGKKNGGPKKRQLDSSEDDDEEEDDDDYDKRGSRRQATVNISY
KEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGD
PNAGFEKSKEPAEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGRECGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEA
QRLAGAGNSKRRKTRTKKNKVLKAAKLKEEIKSDSSPQPSEKSDEDEDENNKDEIVSVKH
LHKKFKAEKENEEKPEPDTGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIKE
KRENKVKESTQKEKEVKEEKVNEIKSENKEKTKKIPLLDTPVHITASSEPVPISEESEEL
DQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPE
QIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHSDQNISGHVNTHVIRNPDV
ERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKNDSRKRPYSAFSNGKDHRD
WDHYKQDSRYYSDSKHRKLDEYRSRDHRSSLEGSLKDSRIHLDHRSHSDHRIHSDHRSSS
EYSHHKSPRDYRYHSDWQMDHRASGSGPRSPLDQRSPFGSRSPLGHRSPFEHSSDHKSTP
EHTWSSRKT
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcatagtgatgaagaaagtgttggaaacagtagtggagaatcaagccgatca
gatgatgattctgggtcagcatcagcttctggatctggttcaagctctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcaggcact
cagtcagaatcagagtctgacacatctagagagaagaaacaaattcagtctaaaccgcca
aaagttgatggatctgagttttggaagtctagtccaagtatacttgccgtgcaaagatca
ggagtactcaagaagcagcaacaacaaaaggcagcctcatcagacagtgtttcagaagag
gactcctcaagtagtgaagattcggcagatgactcatccagtgaaaccaagaaaaaaaca
cataaagatgaagactggcaaatgtcaggatcagggtctatgtcgggaacaggttcagat
tctgaatcggaggaagacagggagaaaagcagctgtgaagagagtgaatctgactatgag
ccaaaaaacaaagtcaaaagccgtaaacctccaaccagaattaagccaaaaagtgggaaa
aagaatggaggaccaaaaaagaggcaacttgattcttcagaggatgatgatgaggaagag
gatgatgatgattatgataagaggggatctcgtcgccaggcaacagtaaacattagttac
aaagaagctgaagaaacgaagacagattctgatgatttgctagaagtttgtggagaagat
gttccacaacctgaagaagatgaatttgaaactatagagaaatttatggatagtcgagtt
ggccgtaaaggagccacaggtgctgcaaccacaatatatgcagttgaggccgatggtgac
ccaaatgctgggtttgaaaaatcaaaggagccggcagaagtacagtatcttattaaatgg
aagggttggtcacacatccataacacttgggaaactgaggaaacactgaagcaacaaaat
gttaaaggaatgaagaaactggacaattacaagaaaaaggatcaagaaacaaaacgatgg
ctgaaaaacgcttctccggaagatgtggaatattacaactgccagcaggagcttacagat
gatctacataaacaataccagatagtggaaagaataattgctcattcaaatcagaaatca
gctgctggttatccagactactattgtaagtggcagggtctgccttattctgaatgtagc
tgggaagatggagctctcattgccaaaaagtttcaggcacgcattgatgagtacttcagc
agaaatcaatccaagaccactccctttaaagattgcaaggttctaaaacaaaggccacga
tttgttgcactaaaaaaacaaccatcttacattggaggacatgaaagtttagagttaaga
gattatcagttaaatgggttgaattggcttgctcactcatggtgcaaagggaatagctgt
attcttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactat
ctgtttcacgagcatcaattgtatgggcctttcttgttggttgtgccactttctaccttg
acgtcttggcaaagagagattcaaacctgggctcctcagatgaatgctgtagtttactta
ggagacataactagtagaaatatgataagaactcatgaatggatgcatccacagaccaaa
cgattgaaatttaacatactcttaacaacatatgaaattttgctaaaggataagtcattc
cttggtggtctgaattgggcattcataggagttgatgaagctcatcgtttaaaaaatgat
gactctcttctgtacaaaactttaatagactttaagtctaaccatcgtcttcttattact
ggaacacctctgcaaaactctctcaaagagctttggtctttactccacttcatcatgcca
gaaaagttttcttcatgggaagattttgaagaggagcatggcaaagggagagaatgcggt
tatgcaagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaagatgta
gaaaagtccttacctgctaaagttgagcaaattctgaggatggaaatgagtgcattgcag
aagcaatactacaagtggattttaaccaggaattataaggcccttagcaaaggttcaaaa
ggcagtacctcagggttcttgaacatcatgatggaactcaagaagtgttgcaaccattgc
tacctcattaaaccaccagatgataatgaattttataataaacaggaggccttacagcat
ttaatacgtagcagtgggaaactaatccttcttgacaagctactgattcgtctgcgagaa
cgtggcaacagagtcctgattttttcacagatggtaaggatgctggacatcctggcagaa
tatctgaaataccgtcaatttccatttcagagacttgatggatcaataaaaggggaattg
aggaaacaagcactggatcattttaatgcagaaggatcagaggacttctgctttttacta
tctaccagagctggaggattaggtatcaacttggcatctgctgatacggtggttatattt
gattctgactggaatccacagaatgatctgcaagcacaggctagagcacatagaattgga
cagaagaagcaggttaatatttatcgactagtcacaaaaggatcagtagaagaagatatt
cttgaacgagccaagaaaaagatggtgttagatcatttagtaattcaaagaatggacact
acagggaaaactgtgttacatacaggctctactccttccagctcaacaccttttaataag
gaggagttgtcagcaattttgaagtttggtgctgaggaactttttaaagaacctgaaggg
gaagaacaggagccacaagaaatggatatagatgaaatattgaagagggctgaaactcgg
gaaaatgagccaggtccattaactgtaggggatgagttgctttcgcagttcaaggtggcc
aacttctccaatatggatgaagatgatattgagttggagccagaaagaaattcaagaaat
tgggaagaaatcattccggaggtccagaggcgaagaatagaagaggaggaaagacaaaaa
gaacttgaagaaatatacatgcttccaagaatgagaaactgtgcaaaacagattagcttc
aatggcagtgaagggagacgcagtaggagtagaagatactctggatctgatagtgactcc
atctcagaaagaaaaaggccaaaaaaacgtggaagaccacgaactattcctcgagaaaat
attaaaggatttagtgatgcagagatacggcggtttatcaagagttacaagaaatttggc
ggccctcttgagaggttagatgctgtagctagagatgctgagctagttgataaatcagag
acagacctcagacgtttgggagagcttgtacataatggatgcattaaagccttaaaggac
aattcatctggacaagaaagagcaggaggtagacttgggaaggttaaaggcccaacattc
cgaatctcaggagtgcaagtaaatgcaaaattagtcatctctcatgaagaagagttggca
ccattgcacaaatccattccttcagatccagaagaaaggaaaagatatgtcatcccatgc
cacactaaggctgctcattttgatatagattggggtaaggaagatgactccaatttgttg
ataggcatttatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctc
agtttgacacagaagattttgcctgatgatccagataagaaaccccaagcaaagcagtta
cagacccgtgcagactacctcattaaattacttaataaagaccttgcgaggaaggaagca
caaaggcttgctggagcaggcaattcaaagaggaggaaaacaagaactaagaagaataag
gtgctaaaggctgcaaaattaaaagaagaaataaaaagtgattcttcaccacaaccctca
gaaaaatctgatgaagatgaggatgagaataacaaggatgagattgtttcagtgaaacat
ctgcataaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagatactggt
ataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagggatttg
aaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaggatattaaagaa
aagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaag
gtaaatgaaatcaaatccgaaaataaggaaaaaacaaaaaaaattccattgctggatact
ccagttcatattactgcttctagtgaaccagttcctatatcagaagaatctgaagagcta
gatcagaaaacttttagtgtgtgcaaagaaagaatgagacctgtcaaggcagcattgaaa
cagcttgatcgaccagagaagggcctttctgaaagagaacagctggaacatactagacag
tgtcttatcaaaattggggatcatattactgaatgtctaaaggagtatacaaatcctgaa
caaattaaacagtggagaaaaaatttgtggatttttgtctccaagtttacagaatttgat
gccagaaagttgcacaaactgtataaacatgcaatcaaaaaacgtcaagagtctcagcaa
cacagcgatcagaatattagcggtcatgtgaatacacatgtaattagaaatccagatgtg
gaaagactgaaggagaatacaaaccatgatgacagtagcagagacagctattcctctgat
agacatctgtcacagtaccacgatcatcataaggacaggcatcagggagatgcttacaag
aaaaatgactccaggaaaaggccctattcagccttcagcaatggaaaagatcacagagac
tgggatcactacaaacaagacagcagatactacagtgatagtaaacataggaagttagat
gagtacaggagcagagaccacaggtcaagcctggaagggagtctaaaagacagccggatt
catttggaccaccgttcccattcagaccacaggatacattcagatcaccgttcctcttct
gagtacagccatcataaatctcccagagattataggtaccactcagactggcaaatggac
cacagagcttcaggtagtggcccaaggtcaccactggatcagaggtctccttttggttca
agatctcccctcggtcacagatctccatttgaacattcatcagatcacaaaagtacacct
gaacatacatggagtagccggaaaacataa
DBGET
integrated database retrieval system
