Serinus canaria (common canary): 103821095
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Entry
103821095 CDS
T05755
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
scan
Serinus canaria (common canary)
Pathway
scan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103821095 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103821095 (MTREX)
03041 Spliceosome [BR:
scan03041
]
103821095 (MTREX)
03009 Ribosome biogenesis [BR:
scan03009
]
103821095 (MTREX)
03016 Transfer RNA biogenesis [BR:
scan03016
]
103821095 (MTREX)
Enzymes [BR:
scan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103821095 (MTREX)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103821095 (MTREX)
Spliceosome [BR:
scan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103821095 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
103821095 (MTREX)
Ribosome biogenesis [BR:
scan03009
]
Eukaryotic type
Pre-60S particles
Helicases
103821095 (MTREX)
Transfer RNA biogenesis [BR:
scan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103821095 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Adeno_PV
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103821095
NCBI-ProteinID:
XP_030093399
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKSKTGPAEGARRPGKRLEEKPSVPAAIVKPKREAE
IDSTENVVLGKKMKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQ
VVPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcctttggggatgagctcttcagcgtgtttgaagaggacgcggccgccgct
gcttctggcgccaagaagagcaaaacgggccccgccgagggtgccaggaggccgggaaaa
agattggaagaaaaaccttcagtaccagcagcaatagtcaagccaaaaagggaggctgag
attgatagtactgaaaatgtcgttctgggaaaaaaaatgaaattggaagatgttttatca
gaagatgttaatctgacagatctgatgcctcaagtaaaggtgcagtctgtggaaactgtt
gaaggctgtacacatgaggttgcgcttccagcaaatgaagaattcacaggtctgaaacca
agaactggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtgttggtgtcagctcacacatcagctggtaaa
actgtttgtgctgagtatgcaattgctctggctttgagggaaaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagttgca
tgggtaatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgacctactccactgcagcattatatatttccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgcaggagacttagcaaaaggggatcagaaaggaaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccata
gaaatccttttctcagagggcctaataaaggccttatttgcaacagaaacttttgctatg
ggaattaacatgccagccagaactgtgctgtttacaagtgccagtaaatttgacggaaaa
gatttccgatggatatcctcaggcgaatacattcaaatgtcaggtcgcgcaggacgccga
ggtatggatgacagaggaatagtaatccttatggtggatgaaaaaatgagtccaaccatt
ggcaagcagcttttgaagggttcagctgatcccttaaatagtgctttccacctgacatac
aacatggtattgaacttacttcgagtggaagaaattaaccctgaatatatgttagaaaaa
tcattttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataat
ctggaagcacaatacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaacca
aagtactgcttgccctttctgcagccaggaagactggtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattgtatgtagttgaagtgctcctgcactgcagcaaagacagtttg
aaaaattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcag
gttgttcctgttttggtgcatcttgtctcagctatcagcagtgtccgcctctacatacca
aaggacctgaggcctattgataataggcaaagtgtgttgaaatctgtacaggaggtacag
aaacgttttcctgatggagtgcccttattggaccctattgatgacatgggcatcaaggac
caagggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacat
cctcttcacaacgatccaaacttggaaaccatatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagtagcaaagcgagaactgaagaaagccagaactgtcctgcaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacggaaatgatgttcaatggtctcttcaatgatttgtctgcagagcaggcaactgca
ctacttagctgttttgtgtttcaagagaattccagtgaaatgccaaaattgactgaacag
ttggcgggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagca
gaagcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgcatgaggcgtctagaagagctgcttcggcagatg
tgccaggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtctttgctgcaagcctttacctgtaa
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integrated database retrieval system
