Serinus canaria (common canary): 103821828
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Entry
103821828 CDS
T05755
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
scan
Serinus canaria (common canary)
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scan03036
]
103821828 (SHOC1)
Chromosome and associated proteins [BR:
scan03036
]
Eukaryotic type
Meiosis-specific proteins
Others
103821828 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
103821828
NCBI-ProteinID:
XP_030093247
LinkDB
All DBs
Position
Unknown
AA seq
1470 aa
AA seq
DB search
MTVEMLKTSQSKMFAALKYHATDYLYESMARQKFSIWKLSLCFPPCLHQDEKYHLSGLFA
DDKYRKPWTRIGSTQNMVAISVLEQWKKSLPVEDFLEKKPISSVEFQTSNDLIEVIPSSN
PCSQTDTEESFLLMNNAFKEDSTEDKYLKIYYATEFKEPQQDLCLEEEFVFIDNLESFLK
KLPTLSILLSRLQFFLVKDPLLDSEGQFLTAENIFRECLTFQNGMKMEESQNELQGIKES
FCTVSMKDEEYFLLPVDLEFGKPDNGRSDCVKIPSYLELKEVLNLAPVIVDDEDLCKQVI
REDLKAEITYKIEISTYSAIPQEACSSISTSMLEFCESAEYIPYLKDEMEVPLTPPCRQQ
RSWVSFLCRRLQEEPISLTGNSILIAEPSREFLESLVWQSEKYQDNMSSLLLVEHPAVYC
AHQHHSLRELQKKLIHEIEAPMFGSLEEGWWLHRGLNPAAVEILEQFNMDGSSANSLLPT
EVETFTQFTSYQLERWLEEKNSVANQELLSAARHQLEKVVNPDLSLQIQRQNFAMSAPSP
AKIHSRSTSVAELTGGSISKIKTEEAICFLNQGKKTPKPSESDSCKDVSSKLDKSSCGGK
PASLTLASKWASDDSDLNNFIMMRSKYTVTQREEKYYGDRPEKVIQLEEQHMSVHKEDDS
FCETVKTEENTHENKDSITVNIQPSESQCQAYCLLEEAAIPVLKDLTDLGVLASVTWSFD
SVKFDHTRFFLKQQEKVICDNFKQGRIDEKEIMLFRHAALVHLLVTVRDLLLTCGLDTAL
GYLSKAKDIYKNILESCLNNIWRQLKIVQYSSQKKHETHPKITALQCEMLNWMKSCGEKH
SVKILIITRVDSEREKAAFIHPLSRIEGLKAVDLNSEKKGSPLSCKEIINNLSRYSCIIV
HNQQIGADFPWTHFSLVMEYDYSENSGWKNLCKNLNVTYMTFKTTLPETIQMGNHGGSFI
LEVQIPYVFLTTEGLLNMPDILQLFESKYSITFVERSSSYSLRLFGSTDRYVVLTVDECT
AIFLQSVEELNYEDSCDTVISKLMALSLQYMCCWIIFYSRERLSLEYSLKGNTLLNLVLI
YATLIELAQKSEDFEVKVVLTPGIEETALVIRQIADNILMASNISPHEWLDKSWLSVLPS
EPEKCLLTFPCINPLVAQFMLKKGSSLNRLFLASFDQLQELLPQAPKKVLKHFSDMVSSY
SLNTAALEKTVKVASHPENQNNVNTLYLDNKQNCQILELLDKAQNSTGTSHLNSEGLIPP
LNHPKGFLKSDLPSCMQKKACSSDVITRRKLDFFALSKDYEDFTHLEAKNSLHVQRQPFR
MHDRSDLSSKDSEKEDFFAAFSDCAPQERSKSFLDEFRDTTFKSPEIQIDQPLWNDSSST
DQCNSFAHDCFLSNFFDDMDELQNLNFSQIGEIIGKTPKRKRKQRPPLLWTKEKIQTDSG
FPEGEELKKRRLTYERVPGRRDGQTRLKFF
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgaaatgttgaaaacgtcacaaagcaagatgtttgcagctttgaagtatcac
gcaacagactatttatatgagagcatggcaaggcagaagttttccatctggaaattatca
ctttgctttcctccctgtttacatcaagatgaaaagtaccatctcagtggactctttgct
gatgataagtataggaagccatggactagaattggttcaacacagaacatggtggctatt
tcagtgttggagcaatggaagaaaagtttacctgtggaggatttcctggaaaagaaacct
atctcctctgtagagtttcagactagtaatgatttgatagaagttattccaagttcaaat
ccttgctctcagactgacacagaagaatcttttttacttatgaataatgcttttaaggaa
gactccaccgaagacaaatatttgaagatttactatgccactgaatttaaagaaccacag
caagatttatgtttggaagaagagtttgtttttattgacaatcttgaaagttttcttaaa
aaattgccaactttatctatacttctgagcagactacagttttttttagtgaaagatccc
cttttagattctgaaggccagtttttaacagcagagaatattttcagagaatgtttgact
ttccaaaatggaatgaagatggaagagagtcaaaatgaattgcaggggattaaagagagt
ttctgtactgtgtctatgaaagatgaagagtatttcctgttgcctgttgatttagaattc
ggcaaaccagacaatggcagatctgattgtgttaagattccatcatacttggaactaaag
gaggtgttaaatttagctccagtcattgtagatgatgaagacctttgcaaacaagtgatc
agagaagatctcaaagcagaaattacatacaaaatagaaatttccacatactctgccatt
ccacaagaagcttgctccagtattagcacaagtatgctggaattctgtgagtcagctgaa
tatattccatatttgaaagatgaaatggaagtgcctttaactcctccatgcagacaacaa
agatcatgggttagttttctgtgcagaagacttcaagaagaacctatttctctcactggt
aacagtattttgattgcagagccctctagggaattcttagaatctttggtatggcaatca
gagaagtatcaggataatatgagctctcttttgcttgtcgagcatccagctgtttactgt
gcacatcagcatcattcactgagagagctgcagaaaaagctgatacatgagattgaagca
ccaatgtttggctcactagaggagggctggtggcttcataggggtttaaatccagcagct
gtagaaattttggaacaattcaatatggatggaagtagtgcaaacagtctgcttcctaca
gaagtagaaacattcacacaatttacatcataccaattagaaagatggcttgaggagaag
aattctgtggcaaaccaagagctgctttctgctgcaagacatcagttggagaaagtagtt
aatcctgacttgtcactgcagattcaaaggcagaactttgccatgagtgctccatcacct
gcaaaaattcacagcagaagtacatctgtggcagagcttactggaggaagcataagcaag
attaagacagaagaggcaatttgcttcttaaaccaaggaaagaaaacccccaaaccatct
gaatcagacagctgtaaagatgtgtcttctaaactagacaaatcatcctgtggtggaaag
cctgcatcacttacacttgcttctaaatgggccagcgatgattcagatctgaacaacttt
attatgatgagatctaaatatacagtcacccaaagagaggaaaaatattatggagataga
cctgaaaaagtgatacagcttgaagagcagcatatgagtgttcacaaagaggatgattct
ttttgtgagactgtaaaaacagaggaaaacacccacgaaaataaagacagtatcactgtc
aatattcaaccatcagaaagccaatgccaggcatactgcctcttggaagaagcagctatt
cccgtactaaaagatttgacagacctgggtgtacttgcttctgttacttggagctttgac
agtgttaaatttgatcataccaggtttttcttaaaacaacaagagaaagtgatatgtgat
aattttaaacaaggtagaatagatgagaaggagatcatgctgttcagacacgctgctctg
gtacacctgctggtgacagttcgagatctgctgctaacatgtggcttggatacagctcta
ggttatttgtccaaggcaaaggatatctataaaaacattttagaatcctgtttgaataat
atctggaggcagctgaagattgtacagtacagcagccagaaaaaacatgaaacacatccc
aaaataacagcacttcagtgtgaaatgttaaattggatgaaaagttgtggagagaaacac
agtgttaagatactaatcattacaagggtggactctgaaagagaaaaagctgccttcatt
cacccattatctaggatagaaggtttgaaagctgtggatttgaattctgagaaaaaagga
agccctttaagttgcaaagagatcataaacaatcttagtagatattcctgcattattgta
cataatcagcaaattggagctgacttcccttggacacacttctcactagtaatggaatac
gattattctgaaaattctggctggaaaaatctgtgcaaaaatctgaatgttacttacatg
acttttaaaaccacccttcctgaaacaatacaaatggggaatcatggtggttcctttatt
ctggaagtacagattccatatgtatttctgacgactgaaggtcttcttaatatgccagat
attcttcagctttttgaatccaagtacagcattacctttgttgaaagaagcagcagttac
tccttaaggctctttggaagtactgatcgatatgttgtgctgacagtagatgaatgcact
gctatctttctgcagagtgtcgaagagctaaattatgaggactcctgtgacactgtaata
tcaaagctgatggcattatcactccaatatatgtgctgttggattattttctattccaga
gaaagactgagtttagagtacagtctcaagggaaatactctgcttaaccttgtcttaatt
tatgccactctaattgaacttgcacagaagtcagaagactttgaagtgaaggtagttctt
actccgggaattgaagagacagcactggtaattcgtcagattgctgacaacattttgatg
gcatctaatatcagtcctcatgagtggctggacaaatcctggctttctgtcttgccatct
gagccagagaaatgcctgcttacttttccatgtatcaatcctttggttgctcagtttatg
ttaaagaagggatcttcattgaacaggttatttcttgcaagctttgatcaactccaggaa
cttctgccacaggctccaaaaaaagttttaaagcatttcagtgacatggtatcttcatac
agcctgaatactgccgctctagaaaaaacagtgaaagttgcatcacacccagaaaaccag
aataatgtcaacacattgtatcttgataataaacagaattgtcagattttagagctgctt
gataaggcacaaaacagcacaggaacatctcatttgaattctgaaggcctaattcctcca
ctgaatcatcctaagggttttttaaagtctgatctcccaagttgtatgcaaaagaaagca
tgctcatcagatgtgatcacaaggagaaagctggatttctttgctctatcaaaggactat
gaagattttactcatctagaagctaaaaattctctccatgttcaaagacagcctttcaga
atgcatgatcgctctgatctttcttccaaagactctgaaaaagaggatttctttgcagct
ttcagtgactgtgcacctcaggagaggtctaagagttttctagatgaatttagagacaca
acatttaaaagcccagaaattcagattgaccagcccctgtggaatgattcttcatccaca
gaccaatgtaattcatttgctcatgattgttttctctctaatttctttgatgatatggat
gagcttcaaaatctgaattttagccaaataggtgaaataataggtaaaacacctaaaaga
aagagaaaacaaaggcctccattattatggacaaaagaaaaaattcaaacagattcagga
tttccagaaggggaggagttaaaaaaaaggagattgacatatgaaagagtccctggaaga
agagatggacaaacacgtcttaaattcttttga
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