Serinus canaria (common canary): 103822137
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Entry
103822137 CDS
T05755
Symbol
PATL1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
scan
Serinus canaria (common canary)
Pathway
scan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103822137 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103822137 (PATL1)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103822137 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
103822137 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103822137
NCBI-ProteinID:
XP_009095346
LinkDB
All DBs
Position
Unknown
AA seq
724 aa
AA seq
DB search
MRRRVGRGAVAVDDVMQLRPLWRMRDGARGLGNDGDVLGDPEDALAERLTRLVIDSELED
PAIMQAVHTRDPPQQPGGLNSSIWDSSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQAR
DEERDPSERALPRRSSSPIIGSPPVRAIPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQ
RYPTPYGERMSPNQLCNVPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFAR
VSGLVGSPLPSVNPKLLQGRVGQMMSPAGGFRAFFGAPPPAPSQLPHPPGPGSHLQNLRP
QPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANL
MLQREKDWVSKIQMMQLQSTDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITP
QVAKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLV
TIEKTYSLLLDVEDYERRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHF
MQIMCIRKGKRLVARILPFLAPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVL
YHLPLGTVTSLVQQLTNLPQSAAAPTNMHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNT
ELMQDNQWTELMLMATRELLRIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLV
QGIR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggcgggtgggacgcggggcggtggcagtggatgacgtcatgcagctgcgcccg
ctgtggcgcatgcgcgacggggcccggggcctggggaacgatggggacgttctgggcgat
cccgaggacgcgctggccgagcggctcacgcgcctcgtcattgacagcgagctggaggac
ccggccatcatgcaggccgtgcacaccagggatcccccgcagcagcctggagggctgaat
tccagcatctgggacagttcagccgtgctgcggcgcatccgggggccactcctcactcag
gagatgccgtcggtgtccgtgctggattatgccctgccccagaggcctccgcaggctcgg
gatgaggagcgggatccctcggagcgggcgctgccccggcgctcctcctcccccatcatc
gggagccccccggtccgggccattcccattggcaccccccccaagcaggccgccatccca
aacttcaaccagcagatcctctgtcccaagcctgtccacatccgagctaccatgcagcag
cgttatcccactccctatggagagaggatgtcccccaaccagctctgcaatgttccgaat
tcctccctcctgggccacccgttcccccacagcgtctctcctgttctcacacacctgcag
agagcccagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgg
gtgtccgggctggtggggagcccgctgccctcagtgaatcccaagctgctccagggcaga
gttgggcagatgatgtccccagccggagggttccgtgcctttttcggggctccccccccc
gccccctcgcagctgccgcaccctccaggccctggatcccacctgcagaacctgaggccg
cagccccagatgttccggccagacacgactcatctgcacccccagcaccgccggctcctg
caccagcggcagcagcagaaccgcaaccagcaccggagcctcaacggctccgggggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctc
atgctgcagcgggagaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgattattattatcagaattatttccagaagctggagaagttggca
gcagccgaggaagtgcacggtgatggtcccaagaaggagcgcactaaactcatcacgcct
caggtggccaagctggagcacacctacaagccagtgcagtttgagggctcgcttggaaag
ctcaccgtctccagtgtcaacaacccccggaagatgatcgacgcggtggtgacgtctcgc
agcgaggatgatgagacaaaggagaagcaggttcgggataagaggcgacagaccctcgtc
accatcgagaagacgtacagcctcctcctggatgtggaggactacgagcgccgctacctc
ctgagcctggaaggggagcggccagccctgatgggagagaggaagcagaagatctgtgac
atgtatgacaatctgagagggaaggcacctgggcaggacaggccgagcgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatcctgcccttccta
gctcctgagcaagcggctgacgtgctcatggccacagccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctc
taccaccttcccttgggaacagtcaccagccttgtgcagcagctcacgaacctacctcag
agcgccgccgctcccaccaacatgcacctcactgctgtgctccaaaacaagtttggtctg
tccctgctgtacctggtcctgagccgaggggaggaattgcagagctcggacacgaacaca
gagctgatgcaggacaaccaatggacggagctgatgctgatggcgacccgggagctgctg
cggatccctcagggagccttggcaaagcccgtgtccatcccctccaacctgatctccctc
ttctcccgctacgttgaccagcagaagctgaacctgctggagacgaaattgcacttagtg
caggggatccgatag
DBGET
integrated database retrieval system
