KEGG   Serinus canaria (common canary): 103822617
Entry
103822617         CDS       T05755                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
scan  Serinus canaria (common canary)
Pathway
scan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:scan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103822617 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:scan03041]
    103822617 (SNRNP40)
Spliceosome [BR:scan03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    103822617 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    103822617 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 PROPPIN PD40 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 103822617
NCBI-ProteinID: XP_030088213
LinkDB
Position
Unknown
AA seq 298 aa
MLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNFATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 897 nt   +upstreamnt  +downstreamnt
atgctgctctcaggacacgagggggaggtttactgctgcaagttccaccccaatggcaac
accctggcctcagctggcttcgacaggctcatcttgctctggaacgtctacggggactgt
gacaactttgccaccctgaagggacacagcggggctgtcatggagctgcactacaacacg
gatggcagcatgctcttctcagcatccacggacaaaaccgtggctgtgtgggacagtgag
acaggggagagggtgaagaggctcaagggccacacgtcctttgtcaactcctgctaccct
gcccggaggggaccccagctcgtctgcaccggcagcgacgatggcactgtcaagctgtgg
gatatcaggaaaaaagctgctgtccagacattccagaacacctaccaggtcctggctgtc
accttcaacgacaccagtgaccagatcatctctgggggcattgacaatgacatcaaggtg
tgggacctgcggcagaacaagctcacctacaccatgcggggccacgccgactcggtgacg
ggcctgagcctcagctctgagggctcctacctgctctccaacgccatggacaacacagtt
cggatctgggacgtgaggccctttgcccccaaggagagatgtgtgaagattttccaggga
aatgtccataattttgaaaagaaccttctgaggtgctcctggtccccagatggcagcaaa
attgcagggggctctgctgacaggtttgtgtacgtgtgggacaccacctccaggaggatc
ctctacaagctgcctggccatgctggctctgtcaatgagctggccttccaccccgaggaa
cccatcattctctctgcatccagtgacaaaaggctctacatgggggagatccagtga

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