Serinus canaria (common canary): 103823923
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Entry
103823923 CDS
T05755
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
scan
Serinus canaria (common canary)
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103823923 (HTT)
04131 Membrane trafficking [BR:
scan04131
]
103823923 (HTT)
03029 Mitochondrial biogenesis [BR:
scan03029
]
103823923 (HTT)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103823923 (HTT)
Membrane trafficking [BR:
scan04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
103823923 (HTT)
Mitochondrial biogenesis [BR:
scan03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
103823923 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
103823923
NCBI-ProteinID:
XP_009097349
UniProt:
A0A8C9NSR2
LinkDB
All DBs
Position
Unknown
AA seq
3095 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEESLQRPKKELAATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPPLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHRDHNVVTGALELLQQLFRTPPPELLHALTASGGIAQVIVSKDEPASR
SRSGSIVEFIAGGGSSCSPVLARKHKAKVLLGEEEGLDDDSETRSDVSSASFSASVKGEI
TSELASSSGVSTAGSVGSSAADATGHDIITEQPRSQHTLQSDSVELPSCDLTSAATEGEE
EEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSSESFRNSSLALQQSHLLKTMSHSRQPSDSSVDR
FTSKEDAADAGDHESKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLETMGEEYEEQYVSDVLNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEG
KTESLHRGVHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLVRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRAYRGYNMLQSPTDVTMENNLSRV
IAAISHALTVSTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEGQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEP
WPALSDRALVSLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQASVPMSPKKSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGLSSNPSKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTNISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNMSTPE
DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMVPTHPSLVLLWCHILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLETKRGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG
EDQPPLENVVLDKDWYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLSSFMTSKEFNLSL
LAPCLSLGMNEISREQKSSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKK
LSDIFGDEVMYQTMMTLCRALAQYLLLLSKLPAGLRVPPDKEGDVLKFVVMSVEALSWHL
VHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGN
QLLSPERKNTSKPLSEGEIDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEIPVEFLQEKEIFK
EFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNN
ITPLREEEWGEDEEDENDVPAPSTPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSN
PSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSD
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMY
TGKEKISPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEEL
DRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgaatcgctgcgctccttccagcagcag
cagggccccgctgcccttcccgaggagtcgctccagagaccaaagaaagaacttgcagct
accaagaaagatcgagtgaatcattgtctaacaatatgtgaaaacatagttgctcagtca
ttaaggaattccccagaatttcagaagctgctgggtattgctatggagctctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttagaactctataaagagatt
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggaggtttgctgagcttgcc
catctagttcggcctcagaagtgcaggccgtacctggtgaaccttttgccctgtctgaca
cggatcagtaagagacccgaggaatcggtgcaggagacgctggctgcggcaatacccaaa
atcatggcagcctttggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca
gtaagcatctgccaacattcacgaagaacacagtatttttatgcctggttattgaatgtg
cttttaggcttgttggttcctgtagaagatgatcgtcctcctcttttaattctgggtgtt
ttattgacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
atacaggtttatgaactgactctgcactatacccagcatcgggaccataatgttgtgact
ggagctttagaattgctacagcagctctttagaacacccccccctgaactgctccatgcc
ctgactgcctctgggggcattgctcaggtcattgtatccaaagatgaacctgccagcagg
agccgcagtgggagcatagtggaatttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaagctaaagtacttcttggtgaagaagaaggcttggatgatgat
tctgaaacccgatctgatgtcagctctgcgtcgttttctgcttctgtgaagggtgagata
accagtgagctggcttcttcatcaggagtctcgacagccggctcggtggggagctcagct
gcggatgccacgggccacgacatcatcacggagcagccccgctcgcagcacacgctgcag
tccgactccgtggagctgcccagctgtgacctgacaagtgcagccactgaaggggaggag
gaggaagtgctcagtaggagctccagccagatcagtgctgtccagtcagatgccactatg
gatttgaatgacggcacacaggcttcctcaccaattagtgatagctctcagactactaca
gaaggtccagactctgctgttaccccttcagacagttctgaaattgttttggagggtgct
gaaggacagtattctggaatgcagattgggcagctgcaggatgaggaagatgaagctgca
aatattctccaagatgattcgtcagagtccttcagaaattcttctcttgctcttcaacag
tctcacctgctgaaaaccatgagccatagcaggcagccctctgatagcagcgtggatcga
tttacatccaaagaagatgcagcagatgctggtgatcacgagagcaagccctccagggta
aagggggacattgggcactacactgacagagactgtgctcctttggtgcactgtgtcagg
ctgctgtcggcctccttcctgctcactggggacaaaggagctttagttcctgatagagat
gtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagctgttgcacttcac
cctgagtctttcttcagcaaactgtataaaacacctctggagacaatgggagaagagtat
gaggagcagtatgtgtcagatgttctgaactatattgaccacggagatccccagattaga
ggagctactgccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgata
gactgcatacctctgttacagaaaacattgaaagatgagtcctctgttacatgtaaactg
gcttgtacggctgtgaggcattgcatcatgagcttgtgcagtagcagttacagtgagcta
ggtttgcaattgattgttgacctccttgctctgaagaatagctcatactggcttgtaagg
acagaacttctggaaacacttgcagaggtagattttcggctagtcaacttcttggaagga
aagactgagagcttgcacagaggtgttcatcattatactggtctgttaaagcttcaggag
agagtacttgaaaatgttgtaataagtctgcttggagatgaggatccaagagtgagacac
gtggctgcagcttcattagtgaggcttgttccaaagctgttttataactgtgatcaagga
caggctgacccagtggtggcagtagcacgagaccaaagcagtgtctacctgaaactcctc
atgcatgagacacagcccccatctcactttgcagtgagcactatcaccagagcatacaga
ggttacaatatgctgcaaagtccaacagatgtcactatggaaaacaacctttcaagggtt
attgcagcaatttcccatgcactgacagtatccactacaagagcacttacatttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagtgtgggatgg
cattgtggtgtttcccagccaagttcttcagatgaaggtcagaagggctgcaccattggt
atggctggcttggtcctgtctctcctttcatcagcttggttcccactggacctctcagca
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggaaccc
tggccagctctgtcagatcgagctctagtctctttagtagaacagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtgatggatgatgttgctcctggtccagcagta
aaggcagcattaccttctctcacaaatccaccttctcttagtccaattcggagaaagggg
aaggagagggagtctgtggaacaggcatctgtgccaatgagccctaagaagagtggtgaa
gcaagtccagcttccaggcaaactgatgctacaggacctgttccaacaagtaaatcatct
tcagtgggaagtttttatcatcttccatcatacctgaagttatatgatgttttgaaagca
acccatgctaattataaggttactttggatctccagaacacaaatgagaaatttggatgt
ttcttacgatctgccttagatgttctctctcaaatcttggaacttgctactcttcaggac
attggaaagtgtgtagaagaaattttgggatatctaaaatcatgtttcaacagagagcca
acaatggcaacagtgtgtgtacagcagttattgaaaacattgtttgggacaaatctggct
tctcagtacgatggcttgtcttcaaaccccagcaaagctcagggcaaagctcagcgcttg
ggctcctccaacctgaggcctggtctctaccactactgcttcatggcaccttacacacac
tttacacaggcccttgctgatgccagtctgaggaacatggttcaggctgagcaggagcac
gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactaacatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcggtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtctcctg
gattcagatcaggtgtttattggatttgtgctaaaacagtttgaatacattgaagtagga
cagttcagggagtcagaggcaattattcctaatatcttctttttcctggtgttgctatct
tatgagcgatatcattccaaacaaataattggaattcccaagatcattcagctgtgtgat
ggcatcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatt
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagctggaa
actcagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccatcaggtgcta
gaaatgttcatcttggtattgcagcagtgtcataaagaaaatgaagacaaatggaagaga
ttgtctcggcaaatagctgacatcattctcccaatgcttgcaaagcaacagatgcatata
gactctcatgaggctttgggagtattgaacacattgtttgaaattttggccccttcatcc
cttcgccctgtggacatgctattaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctgtggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctatcccgtatacaagagctttccttctcaccatacttg
atttcatgtcaagcaatcaacagactgagatgtggagaaaataacatgtccacaccagag
gatcgcactgaggtcaaacaggtgaaatacccacctgaagagacattttccagattctta
ctacaactggttggcattctactggaagatattgttaccaagcaattaaaagtggacatg
aatgagcagcaacatactttctactgccaggagttgggcacactgcttatgtgcttaata
catatcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttaca
ggagatggatctgatggcagtttctatacacttgaaagtctgagtgaccttgtacagtcc
atggttcctactcatccttctttagttctcctctggtgtcacatcttgcttcttgtcaat
tacaccaactacaactggtggtcagaagtgcatcaaaccccaaagcgacacagcctttct
actacgaaattgctgagccctcatatatctggagacagtgatgaatccgacctggaaacg
aagcgtggcatgtgcaatcgtgagatagtgagaagaggggcactcattctcttctgtgac
tatgtttgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcatgtt
caagacttgattaatctgtcccatgagcctccagtacaagattttatcagtgctgttcac
aggaattcagcagccagtggtctcttcatccaggccatccagtcacgctgtgagaatctt
gcagctcccacaaccctgaagaagaccttgcagtgcttggagggaatccacctgagccag
tcgggggctgtgctgacgctgtacgtggacaagctgctgtgcacgcccttccgagtgctg
gcgcgcatggtggacaccctggcctgccgccgcgtggagatgctgctggcagcaactctg
cagaacagcattgctcagttgccagttgaagaactggatagaattcaggagtaccttcaa
aacagtggattagcagcaagacaccaaagactctactcactcctggataggtttcgtctc
atggtagcaccagacacaaccagtccctcacctctggtcacctcacacccactagatgga
gaagaccaaccacctttagagaatgtggttctagacaaagactggtacgtgtcactagtg
cggtcacagtgttacatcaagtctgactcagcacttctagaaggagcagagctggtaaat
aggattcctcagcctgacctgagctccttcatgaccagcaaggaattcaacctaagcttg
ctagcaccttgtttaagccttggcatgaatgagatctcaagggagcagaagagcagcctc
tttgaaacagctcggagggtaactctggaccatgtgtcttctgctgtacaaaaccttcca
gccaaccaccaggtttttcagccactattgccaactgagccatcagcctactggaaaaaa
ctaagcgatatctttggagatgaggtgatgtatcagactatgatgacactttgtcgtgca
ctggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgac
aaagagggtgatgtcctgaaattcgtagtgatgtcagtagaggcactatcatggcattta
gtgcatgaccagattccattaagtgtagatcttcaggctggtctggattgttgctgtctg
acactacagcagcctagtctttggaatttactgtcttctgcagctcatgtgacatatgct
tgctccttaattaactgcattagattcatcatagaagcagttgctgtggaacctggtaat
caacttctgagtcctgaaagaaagaacacctcaaaacctttaagtgagggggagattgat
tcaaatgtacagaaaacaaaacacattattgcagcatgtgaaatgatagctgagatggtg
gaatgcttgcagactgtcttgtcactggggcacaaaagaaacagcagcatccctgcattt
ctcactcccgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaacagc
tacaccagagtacctcccttggtctggaaattaggctggtcaccaaagccttcaggtgac
tttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaggaaatctttaag
gagttcatctatcgcattaatacacttgggtggatcagccgtactcagtttgaagagact
tgggctactttgcttggtgtgctcgtaactcagcccattgtaatggaccaggaggagaac
cagcaagaggaagatactgagaggacccaaatcaatgttctggcagtgcaagccataacc
tccctggtgctgagtgcaatgaccatacccgttgcaggcaatccagcagtcagctgcttg
gagcagcagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaagcta
agtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagataat
attgctactcatcacttataccaagcttgggaccctgttccatcactttctcctgctact
acaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgtgaaata
ggagatatggattataagttgggacaggtctctatacactccatatggttaggaaataat
atcactccgctgagagaagaagagtggggtgaggatgaagaagatgagaatgatgtacct
gctccttccacaccaccaacctctcctatcaacaccaggaaacaccgggctggtgtagat
atccattcttgttctcagttcttgcttgagctgtacagtcagtggatattgccatccaac
cccagcaagagaacaccagtgattttgatcagtgaagtggtgcgatcacttctggcagtg
tcagacttatttacagaaaggaatcagtttgaaatgatgtatacaacactgacagagttg
agaaaggtgcatccgtcagaagatgagattcttgtacagtatttgataccagctacctgt
aaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactgctg
gaatcaaccctaaggagcacccacatgccaagtcggattggagccctgcatggaatcctt
tatatccttgagtgtgacttgctggatgagacagcaaagcagctcattccaattatcagc
gagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaagag
cacattttggtcatgtgtgcagctgctttctatttgatcgagaattacccgcttgatgta
gggcctgaattctctgcaggaatcattcagatgtgtggagtcatggtgtctggaagtgat
gaatcaacaccatccattatttatcactgtgtcctgagaggattggaacgacttcttctt
tcagagcagctttccaggctggacagtgagtccctggttaagctgagtgttgacagggtg
aatgtgcagagcccccacagagcaatggcagccctgggattaatgctgacttgcatgtac
acaggaaaggaaaaaatcagccccagccgtatcccagatgcaaatcctggtgctcctgac
agtgaatctgtgattgttgctatggaacgggtatctgtcctttttgataggatcaggaag
ggatttccttttgaagctcgagtagtggctcggattcttccacaattccttgatgatttt
ttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaatcagcagcca
tacccacaattcatggcaacagtagtttataaggtgttccagacactgcatagcactgga
caatcctccatggtccgtgactgggtgatgctctctctctctaatttcacacaaagaaca
cccgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagtcaa
tggatttcagcaattcttccacatattatcagcagaatgggaaaatcagagcaggtggat
gttaacatcttctgtttggtggccatagacttctaccgacaccagatcgatgaagagttg
gatcggagagccttccagtcggtgtttgaggtggtggcatctccaggaaccccataccat
cgcctgctgacctgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
