Serinus canaria (common canary): 103824107 Help Entry 103824107         CDS       T05755                                  Name (RefSeq) 3'-5' RNA helicase YTHDC2   KO K20099   ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6] Organism scan  Serinus canaria (common canary) Brite KEGG Orthology (KO) [BR:scan00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:scan03041]     103824107 Enzymes [BR:scan01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      103824107 Spliceosome [BR:scan03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    RNA helicase-like proteins     103824107 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  YTH HA2_C OB_NTP_bind R3H Helicase_C DEAD AAA_19 HA2_N Ank_2 nSTAND3 AAA_22 ATPase AAA_23 PhoH Ank_4 ResIII AAA_29 AAA_16 AAA_7 Motif Other DBs NCBI-GeneID:  103824107 NCBI-ProteinID:  XP_030092962 LinkDB All DBs Position Unknown AA seq 1427 aa AA seqDB search MSRHRRVARRQSGGATGGSVAAAAVRVRAEALREVGVDEEVEMAVQLALERFRSGDEAEM EFPSSFTSSERVFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSEAHTVMTCDLALRTKH AIRSLIQSFPVTHKERTELLPRTERGHACAVESENKEVNKTSGRLNDGIPQVPVKRGESE FDSFRQSLPVLEKQEETVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGTPCRVFC TQPRRLAAVAVAERVAAERGEKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGDS TLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNNLKLIISSAALDANLFIRYFGSCPV IHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQKSTLAEWCSAQENTNKLT SRRQKSVPRTNEEYKWLDEGGDTVFNQLTEKDVNCLEPWIVKKMDSCLSDIWLHKDIDSF AQVLNLILTENVSVDYRHSETGATALMISSGRGFLTQVEQLISMGASIHCKSSNGWMAVD WARRFGQTEVVDLLESYSASFGFGNLDESSLVQKSGSDLSAEDRELLTAYHHSFDDEKVD LDLIMHLLHSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHSSV QTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSHVTMLKM GWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLLAP INCPVVDFLMKAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV LYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAFQ AWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTNS ENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKKIAPANGQAS AIQALPTDWLIYDEMMRAHKTANIRCCSVVTPVTVSLFCGPARLPSNALQPSSSFRGGGV SNDSSDSEMEDKTTANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKPW SQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKSSTET ELSDSSNAEKASVKSTSPALQQPKKYKEKDILLSKRSSDDRSAQSSVKPADSSSYSSPCA SPSSPVSGKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGAFWE SSMVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVDWIRKESIPFQFAHH LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGEKLTEHAK NT seq 4284 nt NT seq  +upstreamnt  +downstreamnt atgtcgcgacacaggcgggtcgcacggcggcagtccggcggggccacggggggctcggtt gccgccgccgcggtgcgcgtccgggccgaggccctcagggaggtcggcgtggacgaggag gtggaaatggcggtgcagctcgccctggagcggttccggagcggcgacgaggcggagatg gaatttccttctagtttcactagtagtgaaagagtatttgttcaccggctgtgtcagtct cttggactggtatctaaaagcaaaggaaaaggagccaatcgatacctgacagtaaggaag aaggatgtatcagaggcacatacagtcatgacttgtgacttggctctccgtacaaagcat gccattcggagtctcattcagagctttcctgtcacacataaggaacgcacagagctcctg ccaaggacagagagaggacatgcctgtgctgttgaatctgaaaacaaagaagtaaataag acaagtggtcgacttaatgatggtatcccccaggtcccagtgaaaagaggggaatcagaa tttgattccttcaggcagtcactaccagttcttgaaaaacaggaagaaactgtccaaata ataaaggacaataagattgttttgattataggagagactggatcaggaaaaactacgcaa atccctcaatttatccttgatgactgctacaagaatggaactccctgtcgtgtgttttgt actcagccaagacgtttagcagctgttgctgtggctgaaagagtggcagcagaacgagga gagaagattggccagacaattggttaccagattcgtttagaaagcagggtttctccaaag acactggtaacattctgcactaatgacatgctccttcgcacgctgatggcaggagacagc actctctccaccgtgacccatgttattgtggatgaagtacatgagagggataggttcagc gacttcttgctaataaaactgagagatgtgctgcaaaaccagaataatttaaaactaatt atttctagtgctgctctagatgcaaatctctttattaggtattttggaagctgcccagta atacatatccaagggaggccttttgaagttaaagagatgtttctggaggacattttacga agtactgggtatacaaacaaggagatggtgaagtacaaaaaagagaagcagcaagaagag aaacagaagagtactcttgctgagtggtgttcagctcaagaaaacactaacaaactgaca tctcggagacaaaaatcggttccaaggacaaatgaagagtacaaatggttggatgagggt ggtgacacagtatttaatcaactgactgaaaaagatgtgaattgccttgagccatggata gtaaaaaaaatggattcctgtctttctgacatctggttgcataaagatattgattcattt gctcaggtgttaaatctcattttaacagaaaatgtcagtgttgattataggcacagtgaa actggtgcgactgctctgatgatttcttcagggagaggctttttgactcaagtagaacag ttgatcagtatgggagcaagtatccactgcaagtcatctaatggctggatggctgtggac tgggctaggcgctttggacagacagaggttgttgatctgttggaatcctacagtgcttca tttggatttggaaatctggatgaaagttccctggtccaaaaaagtggtagcgaccttagt gcagaggacagagaactactgacagcttatcatcatagttttgatgatgaaaaagtggat ctggatctgataatgcacttacttcacagcatctgtcatagttgtgatgcaggagcaatt ttaatatttcttcctgggtatgatgagattgtgagcctgagggaccgcattctttttgat gacaagagatttgctgataatgctcacagataccaagttttcatgcttcattcaagtgta cagactttggatcagaagaaagtgcttgaaactccaccttctggcatccgcaaaattatt ctttctactaatattgcagaaaccagcataacagtcaatgatgtggtgtttgtcattgac tcaggcaaggtgaaagagaagtcttttgatgcactgagtcatgttacaatgctaaaaatg gggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcagcct ggagtctgttttcgtctcttcagcaggcttcgatttcagaatatgttggaatttcagtct ccggaacttctaagaatgccacttcaggagatttgtttgtacacaaaacttctggctcca attaattgtccagttgtagactttcttatgaaagctcctgatcctccgcctgctgtaact gtgagaaatgctgtgcacatgcttaagaccatagatgccatggacccttgggaagatctc actgagcttggttatcacctcactgaattacctgtagagccacaccttggtaaaatggtg ttgtatgctgtagttctgaagtgcctggatcctgttctgactattgcctgtgctcttgcc tgccaagacccttttgtgctgcccacgctagcctcccaaaagcgcgcagccatgctgtgc aggaagcgttttgctgctgggacgttcagtgaccacatggccctgctcagggctttccag gcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttccta tcccaagctacaatggaaatcattgtaggaatgagaacacagttgcttggccagcttaga gcctcaggttttgtgagagccagaggaggagctgatattagagatgttaatactaactct gagaactgggctgtaattaaagctgccttagtggctggcatgtatcccaatcttgtgcat gtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcatcct acctctgttcttggtcaatctcagtataaaaagattgccccagcaaatggacaagcttca gccatccaggccctccctacagactggctcatatatgatgaaatgatgagagctcacaag acagcaaacatcagatgctgctctgttgtgacacctgtcaccgtgtccctcttctgtgga ccagccaggctgccaagtaacgccttgcagccatcttcatcctttcgagggggaggggta tctaatgatagcagtgacagtgagatggaggacaaaacaactgctaatctggcactactg aagctggacgaatggctccatctcaaactggaccctgaagctgctggtatgctgttgcaa ctcaggcagaagtggcatagcttgttcctacgtcgcatgcgagctccttctaaaccgtgg tctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagagcag tctgcaggtctgcagcagccttcaggaatcggccagagaccaagacctgtgacttgtgaa gaacttcctttggcatctacatggaagtcaaccaacagcagaaaaagctcaacagaaact gaattgtctgactcctctaatgctgaaaaggcttcagtgaaatctacatctcctgcactc caacagccaaagaagtacaaagaaaaagacattttgctctccaaacgatcctcagatgac agatcagctcagtcctcagtgaagcctgcagacagcagtagctattccagcccctgtgct agtccttcgtctccagtgtctggaaagggttgcaaatctccttcaccaagacaaaatatg ccagttcggtactttataatgaaaagtagcaacttgcaaaacattgatatttctcaacag aagggaatatggtccactacaccaagtaatgaacggaaactgaatggagccttttgggag agcagcatggtttacttaattttttctgttcaagggtctggatgctttcagggttttgct agaatgggttcagcgattgggtgtgagaaaagtcaagactggggatctgctggttttgga ggtgtatttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacaccat ttgctcaacccgtggaatgacagtaagaaagtacagataagtagagatggccaggagctg gagccacaagttggagagcagttgctgcagctttgggaccgtattcctttggcaggagaa aaactgactgagcatgccaagtaa

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