Serinus canaria (common canary): 103824543
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Entry
103824543 CDS
T05755
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
scan
Serinus canaria (common canary)
Pathway
scan03013
Nucleocytoplasmic transport
scan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103824543 (UPF1)
03015 mRNA surveillance pathway
103824543 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scan03019
]
103824543 (UPF1)
Enzymes [BR:
scan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103824543 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103824543 (UPF1)
Messenger RNA biogenesis [BR:
scan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103824543 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103824543 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103824543
NCBI-ProteinID:
XP_030087758
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGPSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagacaccgcccgggcccggccaggcggggccggcacagggccagggg
ccccccggtgcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaacggagctgtggatgagaacgtggccaagaccagccagctcctggct
gagctcaactttgaggaggatgaggaggacacctactacaccaaggatctccctgtgcac
gcctgcagctactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtgggaacacctctggcagccacattgtgaaccacctggtg
agagccaagtgcaaggaggtgaccctgcacaaggacgggcccctgggagagaccgtcctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatccctgccaaggct
gactccgtggtggttctgctgtgcaggcagccctgtgccagccagagcagcttgaaggac
atcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctctcgtgg
ctggtgaagatcccctcggagcaggagcagctccgcgcccgccagatcacggcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgctaagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaaaggaattgggcacgtgatc
aaagttcctgacagttctacagattatggtgatgagatcgccatcgagctgaggagcagc
gtgggagctcccgtggaggtcacccacaacttccaggtggattttgtctggaaatccact
tcctttgacaggatgcagagtgctctgaaaacgtttgcagtggatgagacctcagtgtct
gggtacatttaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggactccctgatctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacatcgccgtggatcagctgacagagaagatccaccagactggc
ctcaaggtggttcgtctgtgtgccaagagccgtgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctg
aagcgcacggcagagagggagctgctcatgaacgctgatgtgatctgctgtacctgtgtg
ggagctggagaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagccggagtgcatggtgcccgtggtgctgggggcaaagcagctgatc
ctggtgggtgaccactgccagctggggcctgtggtgatgtgcaagaaggcagccaaggct
gggctgtctcagtctctctttgagaggctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgag
ggatccctgcagaacggcgtcactgcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggccaggaggagattgcc
agctcaggcacctcttacctgaacaggactgaggctgccaacgtggagaagatcaccacg
aagctgctcaaggctggggccaagcctgaccagattggcatcatcaccccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctac
caggaagtggaaattgccagcgtggatgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtcagagccaacgagcaccagggcattggcttcctcaacgaccccaggagg
ctgaacgtggccctgaccagagccaggtatggggtgatcatcgtgggcaaccccaaggcc
ctgtccaagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgcgcgagagcctgatgcagttcagcaaaccccgcaag
ctcgtcaacaccatcaaccctggtgcccgtttcatgaccactgccatgtatgatgcacgg
gaggccatcatccctggctctgtctacgaccgcagcagccaagggcgtccatccaacatg
tacttccagacccacgaccagattgggatgatcagtgctggtcccagccacgtcaccgcc
atgaacatccccatccccttcaacctcgtcatgccccccatgccccccccgggctacttc
ggccaggccaacggccccgctgcaggccgtggggctcccaaagggaagactggccgtgga
gggcggcagaaaaatcgatttgggattcctggccccagccagtccaacctgcccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcccagatgagtcagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
