Serinus canaria (common canary): 103826976
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Entry
103826976 CDS
T05755
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
scan
Serinus canaria (common canary)
Pathway
scan04140
Autophagy - animal
scan04148
Efferocytosis
scan05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103826976 (VPS39)
04148 Efferocytosis
103826976 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
103826976 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scan04131
]
103826976 (VPS39)
Membrane trafficking [BR:
scan04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103826976 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
103826976
NCBI-ProteinID:
XP_030096471
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDVGEVMSSESVCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTISKAKGASLFTC
DLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIP
YLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAGEEGGDLGEYRK
KLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENY
CHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVSTLDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtacaaagcaagggcatcttctgctttac
aggatcaagaaagatgtaggagaggttatgtcatcagaaagtgtctgttgcaacaggttt
gaagtgacactagagaaatccaacaagaacttctcaaagaagattcaacagatccatgtt
gtttctcaatttaaaattttggtcagtctattagaaaataacatttacgtccatgacctg
ttgacatttcaacaaatcaccacaatttcaaaggcaaaaggtgcatctctcttcacttgt
gatctccagcagtccgacacaggggaggaggtgctgaggatgtgtgtggcagtgcgtaag
aagctccagctttatttctggaaggacagggagttccatgagctacagggggacttcagt
gtacctgatgtacccaagtctatggcctggtgtgaaaactccatctgtgtaggcttcaag
agggactattacctgatacgggtggatggaaaaggatccatcaaagagctgtttcccaca
gggaagcagctggaaccattggtagctcctgtagcagatggaaaagttgcagttggccaa
gatgatctaacagttgtgcttaatgaagaaggggtctgtactcagaaatgtgccttgaat
tggacagatattcctatagccatggagcaccagcctccctacatcattgctgttctgcca
aggtacgtggagatccgcaccttcgaaccccggctgctggtgcagagcatcgagctgcag
aggccacgcttcatcacctctggaggcacaaacattatatatgtggcaagtaatcacttt
gtttggaggctcattccagtgtccatagccacacagatccagcagcttctgcaggacaaa
cagtttgagttggctttgcagttggcagagatgaaagatgattcggatagtgagaagcga
caacaaatccaccacataaagaatctctttgccttcaacctgttctgccagaagcgtttt
gatgaatccatgcaagtttttgccaagcttggtacagatcccactcatgtgatgggtctg
tatcctgacctcctgcccacagattacaggaaacagctacagtatcccaaccccctgcca
gggctctctggggcagagctggagaaggcacatttagctctgatagactacctaactcaa
aaaaggagtcagctagtgaagaagctgaatgattctgaccatcagtccagtacctcaccc
ctcatggaaggaacacccacgatcaaatccaaaaagaagctgctacaaatcattgatacc
accctgctgaagtgttacctgcatacaaatgtagcactggtggcaccactgctacgtctg
gagaacaatcactgccatattgaggagagtgagcatgtactaaagaaggcacacaagtac
agtgagctgataatactgtatgagaaaaaaggtctgcatgagaaagcattacaggtactg
gtggatcagtcaaagaaagccaactcacctttgaagggtcatgagaggacagtgcaatat
ttgcagcatttgggcacagagaacttgcacttggtattttcctactctgtctgggtgcta
agagattttcctgaagatggactgaagatatttacagaagacctccctgaagtggaagct
ttgccacgagacaaagtgctcagtttcttgatagaaaattttaaaagcttgactattcct
tacctggagcacatcattcatgtctgggaagaaactggtgcggatttccacaactgtctg
atccagctgtactgtgagaaagtgcagggcttgatgaaagaatatctcagctctttccct
gcagatagagctccagtgcctgctggggaggaaggaggagacctgggggagtaccgcaag
aagctgctgctctttctggagaagtcgagctgctatgaacctagccgacttattagtgac
ttcccctttgatggtctcctagaagaacgtgctctgctcttgggtcgaatggggaagcac
gagcaagctctgtttatttatgttcatattttgaaggataccaatatggctgaaaactac
tgccataaacattatgacagaaacaaagatggcaacaaagatgtgtatctgtccctgctg
cggatgtatctctccccacccagtgttcattgcctgggacccatcaagatggaggtgctg
gagcctcaagccaatctgcaggctgctctgcaggttttggagctacaccacagcaaactg
gacaccactaaggcaataaacttactcccagcaaatacacagattagtgagattcgcatc
ttcttagaaaaagtacttgaagaaaatgctcagaagaaaagatttaatcaagtgcttaag
aatcttctccatgcagagtttctgagggtccaggaggagcggatcttgcatcagcaagta
aagtgcataattacagaggagaaggtgtgcactgtttgtaaaaagaagataggtaacagt
gcatttgctcgataccctaatgcaatagttgtgcattatttctgctccaaagaagtcagc
acactggacacctga
DBGET
integrated database retrieval system
