Serinus canaria (common canary): 108963645
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Entry
108963645 CDS
T05755
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
scan
Serinus canaria (common canary)
Pathway
scan04140
Autophagy - animal
scan04148
Efferocytosis
scan05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108963645
04148 Efferocytosis
108963645
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108963645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scan04131
]
108963645
Membrane trafficking [BR:
scan04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108963645
Hops complex
108963645
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_C
Cytochrome_B
Cytochrom_B_N_2
Motif
Other DBs
NCBI-GeneID:
108963645
NCBI-ProteinID:
XP_030094879
LinkDB
All DBs
Position
Unknown
AA seq
610 aa
AA seq
DB search
MGGHWLVLRRLYPLAIRICEFLRLPEMQGVSRILAHWACYKVQQKDKSDEEVAQAINQKL
GDTAGISYSDIATRAYDCGRAELAIKLLEYEPRSGEQVPLLLKMKRSKLALGKAIESGDT
DLVYTVVLHLKNELNRGSFFMTLQNQPVALSLYRQFCRHQERETLKDLGSAGCGVWDLAT
HYTADTNLAFSSVAHICRDVQFGXLIRNLHANGAXFFFICIYLHIGRGIYYGSYLNKETX
NIGVILLLTLIATAFVGYVLPXGQISFXGATVITNLFSAIPYIGQTLVEXAXGGFSVDNP
TLTRFFALHFLLPFVIVGLTLVHLTFLHETGSNNPTGVPSDCDKIPFHPYYTVKDILGFA
LIIALLVSLALFWELWDWDGECGGLGVLREFWGCSGGYQELGDLHVLGGYCQRRIEGRVA
ALQNALDEFYKAKNDFAAKATEEQIKLLRLQRHLQEELDKPYLDLSLHDTVATLILDGHH
KRAEQLYRDFRIPDKRYWWLKINALATRGDWEEMEKFSKSKKSPIGYLPFVEVAVKHHNR
YEAKKYAPRVPPEQRVKAFVLVGDLEQAAEAAIERKNEAEMSLVLSRCSPGTDGALAERL
NRARAQLLKK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggggggacattggctggtcctgcgtcgcctgtaccctctggccatccgcatctgcgag
ttcctgcgcctgccggagatgcagggcgtcagccgcatcctggcacactgggcctgctac
aaggtgcagcagaaggacaagtcggacgaggaggtggcccaggccatcaaccagaagctc
ggggacacggcgggcatctcctactcggacatcgccacgcgcgcctacgactgcggccgc
gccgagctggccatcaagctgctggagtacgagccccggagcggggagcaggtgccgctg
ctgctgaagatgaaacggagcaaactggccctgggcaaggccatcgagagcggggacact
gacctggtgtacacggtggtgctgcacctcaagaacgagctcaaccgaggctccttcttc
atgaccctgcagaaccagcccgtggccctgagcctgtaccgccagttctgccggcaccag
gagcgggagacgctgaaggatttagggtcagcggggtgtggggtttgggatttggccact
cattacacagcagataccaacctagccttctcctccgtagctcacatatgccgcgacgtc
caattcggctgactaatccgcaacctccacgcaaacggagccntcttcttcttcatttgc
atctacctacacattggccgaggaatctactacggctcatacctaaacaaagaaacctga
aacatcggagttatcctactattaaccctcatagcaaccgccttcgtaggttacgtccta
ccatgaggccaaatatcattctgaggcgctacagtaatcacaaacctattctcagcaatc
ccctacattggacaaacactagtagaatgagcctgaggaggattctccgtagacaaccct
acattaacccgcttctttgccctccacttcctactcccattcgttatcgtaggcctcaca
ctagttcacctcaccttccttcacgaaacaggatcaaacaacccaacaggagttccctca
gactgcgacaaaattccattccacccatactacaccgtaaaagacattctaggtttcgca
ctaataatcgcactactcgtctccctagccctattctgggaattgtgggattgggatggg
gaatgtgggggtttgggggtgctcagggagttttgggggtgctcagggggttatcaggaa
ctgggcgacctgcacgtgctggggggctactgccagaggcggatcgagggccgcgtggcc
gccctgcagaatgccctggatgagttctacaaggccaagaatgatttcgctgccaaggcc
acggaggagcagatcaagctgctgcggctgcagcggcacctgcaggaggagctggacaag
ccctacctggacctgtccctgcacgacaccgtggccaccctcatcctggacgggcaccac
aagcgcgccgagcagctctaccgggacttcaggatcccagacaagaggtactggtggctg
aagatcaacgccctggccacccgcggggactgggaggagatggagaagttctccaagagc
aagaagtcgcccattgggtacctgcccttcgtggaggtggcagtgaagcaccacaaccgc
tacgaggccaagaagtacgcgccgcgtgtgccgcccgagcagcgcgtcaaggccttcgtc
ctcgtgggggacctggagcaggcggccgaggcggccatagagcgcaagaacgaggccgag
atgagcctggtgctgtcccggtgctcccccggcaccgacggggccctggcagagcggctc
aaccgggcccgggcacagctcctcaagaagtga
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