Serinus canaria (common canary): 115485174
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Entry
115485174 CDS
T05755
Name
(RefSeq) collagen alpha-2(I) chain-like
KO
K19720
collagen type III alpha
Organism
scan
Serinus canaria (common canary)
Pathway
scan04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115485174
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scan00536
]
115485174
Glycosaminoglycan binding proteins [BR:
scan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115485174
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115485174
NCBI-ProteinID:
XP_030093470
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MWGVGGTWVTRGVVGGTTGVFGAPPGCGDPPVPPLTPRLPQRSPPAASPPGGPRPPPPPP
PPAPRIRLRLGGARPGRASPAPPFSWPPHFLPLGTPGRGGGAVGRGLGGARLWAGAAFAV
LGALGALLLLGGRRAGLARLGGLLAASAFARAFPLFFDPYELGGRLPPPAARALFELPFP
CLGWGLALAPPARGAPLLLALGCCTWGGSWGPWGRWRRWGGPRRCCCCPRALFAALAAAL
ALGGLRRCGAGGGRGKRGGGARAGVRGCWGAGAVLSAGLQLFGALQAWGWALTPAPGPWA
WWGLQLGGRLAELAMGGALAALAFAPPRAAAPPRRPPGRGRGPHGRVPAPLPIDLRRSID
EALGAPGMFRAGNGGIGGTGGTGNTRISLVGNAAGTGNGGKTKSNGVSVLGSTGSTEISV
ISAAGSARSAGSTGSTGTGTGTSTSALPGGGSAAMPGLGTGSAGSASGTAGAAAAGGTGT
AGAGTAGTAGTAGKPGTAGTPDTTGKPGTAGTAGTAGTAGTPSTAGSAGKPGTAGAPGTA
GTAGKPGTAGTPGAAATPGTTGKPGTPGTTGKPGTAGTPGAAKTPGTTGKPGTTGKAGTP
GTTGKPGTVGTLAQPENLTQLAPLEHLAQPAHLAQLEHLAQLENLEQPEHLAQPAHWHSW
HSWHSHHPWHNQHTWHSWHSWHSHHPWHNQHTWHSWHSWHSHHTWHSWHGRRDRARHPRP
SQGQQNRGPRNWHCRHLRDGGTGHGPRHTWHTWHTWHPWHAGPCSAWHRWPVRPRLLWPS
WDTGAWRCCPPRCPPRCPPPPRAVPGRLLRGTLRGGSRRCPSARGPSRGGPSPGTPAQGP
PRAAPPPLRPSQSWAEGSPGPGRPPPRPPSPPRAAAAAAPAVTP
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgtggggcgtggggggtacctgggtgacgcggggggtcgtgggaggaacaacgggggtg
ttcggggcgcccccgggatgcggggacccccccgtcccccctctgacgcctcgtctcccg
cagcgctctcccccggccgccagccctcccggggggccgcgcccccccccgccgccgcct
ccgcctgcaccccggatccgcctgcggctcgggggggcccgacccgggcgggcctccccc
gcgccccccttctcgtggcccccccacttcctgccgctgggcacccctggccgaggcggc
ggcgctgtggggcgcggcctggggggggcacgtctatgggcgggggcggccttcgccgtg
ctgggggcgctgggcgcgctgctgctgctgggggggcgccgggcggggctggccaggctg
ggggggctgctggccgcctccgccttcgcccgcgccttcccgctcttcttcgacccctac
gagctgggggggcgcctgccgccccccgccgcccgggcgctgttcgagctgcccttcccg
tgcctgggctgggggctggcgctggcgccccccgcgcggggcgcgccgctgctgctggcg
ctggggtgctgcacctggggggggtcctgggggccgtgggggcgctggcggcgctgggga
ggcccccggcgctgctgctgctgcccccgcgctctgttcgccgcgctggcggccgcgctg
gcgctgggggggctgcggcgctgcggggcgggcggggggcgcggcaagcgcggggggggg
gcgcgggcgggggtccgcggctgctggggggcgggggcggtgctgagcgcggggctgcag
ctcttcggggcgctgcaggcctggggctgggccctgacccccgcccccgggccctgggca
tggtgggggctgcagctgggggggcgcctggccgagctggccatggggggggcgctggcc
gcgctggccttcgcgcccccccgggcggccgcgcccccccggcgtccccctggacgtgga
cggggaccccacggccgggtaccggcccccctccccatcgacctgcgccgctccatcgac
gaggccttgggagcgccgggaatgttccgcgccgggaacggcggcatcgggggcaccggg
ggcaccgggaacaccaggatcagcctcgtagggaacgccgcgggcaccgggaacggtggg
aaaaccaagagcaacggggtcagcgtgctcgggagcaccgggagcaccgagatcagcgtc
atcagcgccgccggcagcgcccgcagcgccggcagcaccgggagcaccggcaccggcacc
ggcaccagcaccagcgccctgccggggggcggcagcgccgccatgccagggctgggcacg
gggagcgccgggagcgcctccggcacagccggggctgcggcagcgggcggcaccggcacc
gcgggggcgggcacggctggcacggccggcacggccggcaaacctggcacggcgggaacg
cctgacacaaccggaaaacctggcacagctggaacagccggcacagctggcacagctgga
acacctagcacagctggctcggctggcaaacctggaacagctggagcacctggaacagca
ggaacagctggcaaacctggcacagccggcacacctggcgcagctgcaacacctggcaca
actggaaaacctggcacacctggcacaactggcaaacctggcacagccggcacacctggc
gcagctaaaacacctggcacaactggaaaacctggcacaactggaaaagctggcacacct
ggcacaactggcaaacctggcacagttggaacactggcacaaccggaaaacctgacacag
ttggcaccactggaacacctggcacaaccagcacacctggcgcagctggaacacctggca
caactggaaaacctggaacagccggaacacctggcacaaccagcacactggcacagctgg
cacagctggcacagccaccacccctggcacaaccagcacacctggcacagctggcacagc
tggcacagccaccacccctggcacaaccagcacacctggcacagctggcacagctggcac
agccaccacacctggcacagctggcacggccggcgggacagagcgaggcacccccggccc
agccagggacagcaaaaccgcggccccaggaattggcactgccggcacctcagggacggg
ggcaccgggcacggcccgcgccacacctggcacacctggcacacctggcacccctggcac
gcagggccctgcagcgcctggcaccgctggcccgtcagaccccggctcctgtggcccagc
tgggacacgggggcctggcgctgctgccccccccggtgccccccccggtgccccccgccc
ccccgggctgtcccgggccgcctcctgcgggggaccctccgggggggatcccggcgctgc
ccctcggcccggggaccctcccggggggggccgagccccgggacccccgcgcagggccca
ccccgggcagcgccgcccccgctgcggccgtcgcagagctgggctgaggggagccccggc
ccgggccggccccccccgcgccccccgagccccccgcgggcggcggcggccgcagccccg
gcagtgacaccatag
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