Sporomusa carbonis: SCACP_04190
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Entry
SCACP_04190 CDS
T10996
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scao Sporomusa carbonis
Pathway
scao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCACP_04190 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scao03021
]
SCACP_04190 (rpoC)
03400 DNA repair and recombination proteins [BR:
scao03400
]
SCACP_04190 (rpoC)
Enzymes [BR:
scao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCACP_04190 (rpoC)
Transcription machinery [BR:
scao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCACP_04190 (rpoC)
DNA repair and recombination proteins [BR:
scao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCACP_04190 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
XEQ91611
LinkDB
All DBs
Position
461916..465887
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNNFDSMRIGLASPEQIRKWSHGEVKKPETINYRTLKPERDGLFCEKIFGPMRDWEC
HCGKYKRIRYKGIICDRCGVEVTRSKVRRDRMGHIELAAPVSHIWYFKGIPSRMGLILDV
SPRSLEKVLYFASYIVLEPGETPLMKKQLLNENEYREHRDKYGNAFKVGMGAEAIKKLLE
ELDLEKLSRELRQELKEVSGQRKIRAIRRLEVVEAFRKSGNNPAWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVNAGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLSEGRAIKIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARMLMLSAHNIL
STKDGKPVATPTQDMVLGSYYLTIEKEPEDGKIKIFANMNEALLAYTHKVLGLHEKIRVR
LEGYGLVNTTLGRMIFSEVLPLELRHFEKKGDDWHLGKLMDKKQLGKLVADSYRTFGNAK
TAEILDSVKRLGFSFACRAGVTIAISDIKIPAEKKDILAAAEAKVDTIDKQYRRGLITDD
ERYKKTIDLWTKATDDVTTALMNTLDRFNPVYMMANSGARGNIQQIRQLAGMRGLMADPS
GRIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVRE
EDCDVVGLNLVRERARLAQSSAGAIDVLRDTLLGRVLAQDVYDPKTADVLLAQGTVLADD
NLRLIGEHGVPEIMIQGQTDETEEDVGRAAAVETIVLGAPEEKVRAALKEAMIREMLGKN
TTEAIKTSDGVELVPADTPLTEEHIEAVLASDVKEVKVRNNNIKGIEVEAIKEGSGVIES
LKDRIVGRISAEDIVDPTTGEIIVKINDEITEDLADRIVKVREKVSIRSVLTCRSRYGVC
IKCYGRNLGTGHMVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEEL
FEARKPKRQAIITEVDGKVEIKEIKGMRRVTVYPSDASLGEERVYQIPYGARLIVSDGQM
VEAGDRLTEGAVNPHDILRVSGLKATQRYLVYEVQKVYKSQGVEINDKHIEVMVRQMLHK
VKVEEAGDTDLLPGEYIDLNTFEEENAKAIEAGGEPAIARPILLGITKASLATDSFLSAA
SFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLVPAGTGMSRYRNVRIKKPAVQPEINEF
AGE
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtaaacaactttgattcgatgcgtattggtctggcgtcaccggagcaaatc
cgcaagtggtcgcatggggaagtgaagaaacccgaaaccatcaactaccgtactctcaag
cctgaacgggatggcttgttttgtgaaaaaatctttggtccgatgcgggactgggaatgt
cactgcggcaaatacaaacggattcgttacaaaggtattatctgtgaccgttgcggcgta
gaagtaacccgttccaaagtgcggcgcgacaggatggggcatattgaattagctgcgcct
gtctcccacatctggtattttaaaggaatacctagccggatggggctgatacttgacgtt
tccccgcgctctctggaaaaagtcttatatttcgcttcatacattgtgctcgagcctggc
gaaacgccgctcatgaaaaaacaactgttaaacgaaaatgaataccgggaacaccgtgac
aaatatggaaacgcgtttaaagtgggtatgggtgccgaagccattaaaaaactgttagaa
gagcttgatttagaaaaactcagccgcgaactccggcaagagcttaaagaagtgagcgga
caacgtaaaatacgggctatcaggcggctggaggttgttgaggccttccgtaaatcaggc
aataatccagcctggatgattatggatgtagtccccgtcattccgcctgagctccggccc
atggtccaacttgacggcgggcggtttgccacttctgatttaaacgatctgtaccggagg
gtaatcaaccgtaacaaccgcctaaaacgtctattggacttaggtgcgcctgatataatt
gttcgtaatgaaaaacgtatgctgcaagaagctgttgacgccctaatcgacaacggccgc
cgtggtcgtccggttaccggaccgggtaatcgtcctttaaaatctttaagtgacatgctt
aagggcaaacaggggcgtttccgtcagaatcttttgggtaaacgcgttgattactcaggc
cgttcggttatcgttgttggtccggaacttaaattgcatcaatgcggcttacctaaagaa
atggctttggaactctttaaaccgtttgttatgaaaaaactggttaatgccggtcatgcc
cacaacattaagagtgccaagcgtatggttgaaagagtgcgcccagaggtctgggatgtg
cttgaagaagtcattaaagaacatcccgtgcttttaaaccgcgccccgaccctgcataga
ctgggaatccaagcgtttgagccggtattgtcagaaggccgggcgattaaaatccacccc
ttggtatgtacagcatataatgccgattttgacggcgaccagatggccgtgcacgtaccc
ctgtcagccgaagcccaggccgaagcccgcatgctcatgctgtcagctcataacatttta
tccacaaaagatggcaagcctgtggccacacctactcaggatatggtacttggttcctac
tatctcactattgaaaaggaacctgaagacggcaagattaaaatatttgccaatatgaat
gaagcgctgctggcttatacccataaagtacttggattacatgaaaaaattagggtgcgt
ctggaaggctacggtttagtcaataccactctgggccggatgattttcagtgaggtattg
ccgcttgaactaaggcactttgagaaaaagggtgatgactggcaccttggcaagctaatg
gataaaaagcagctgggtaagcttgttgccgattcctatcgcacttttggtaatgccaaa
acggcggagatattggactctgttaaacgtctgggcttctcgtttgcctgccgcgccggc
gtaaccattgctatatctgacatcaaaattcccgccgaaaagaaagacattctggcggca
gccgaagccaaagttgacacaattgacaaacagtaccgtcgcggccttattactgatgat
gagcggtataagaagactattgatctctggaccaaggctactgatgatgttaccactgcg
ctgatgaatacccttgaccgctttaacccggtttacatgatggctaactcgggtgcgcgc
ggtaacatccaacagatccgtcagttggccggtatgcgcggacttatggccgacccgtcc
ggtcgaatcattgacctgccgattaaagccaacttccgtgaaggtctgaccgtattagag
tactttatttcgactcatggcgcgcgcaaaggtttggctgataccgcactccggacagct
gactcaggctacctaacccgccgacttgttgatgtggcccaagatgttattgtccgggaa
gaagactgtgacgttgttggccttaacttggtgcgggaacgggcacgtttggctcaatca
agtgccggagccattgatgtgctcagggatacgctgctaggacgggttttggctcaagat
gtgtacgatcccaaaacagccgacgtattgcttgcccagggtacggtacttgctgacgac
aacctccgtctcattggcgaacacggtgtccctgaaatcatgattcagggtcaaactgat
gaaacggaagaggatgttggccgcgcagctgccgtcgaaacaatcgttctcggtgccccg
gaggagaaggtacgtgctgctcttaaagaagccatgataagggaaatgcttggcaaaaac
actaccgaggccataaaaaccagcgatggtgttgaacttgttcctgccgacacgcctttg
actgaagaacacattgaggccgtcctggccagtgatgtcaaagaagtaaaagtccggaac
aataatattaaaggcattgaagttgaggccatcaaagaaggctcaggtgttattgagtcg
ctcaaagaccgcattgtcggcagaatttcggccgaggatattgttgatccgactaccggt
gagataattgttaagatcaatgatgaaataactgaagatttggctgaccgtattgtcaaa
gtacgtgaaaaagtgtcaattcgctcagtacttacttgccgttcccgttatggagtatgt
atcaaatgttatggccgtaacctgggtaccggccacatggttgatgttggcgaagctgtc
ggtattattgccgcgcagtccatcggcgagcctggaacccagcttaccatgaggaccttc
cacaccggcggtgttgccggtgacgacattactcaaggtttgccgcgggtagaggagtta
tttgaagcccgtaaacctaaacgccaggccattattaccgaagtggacggcaaagtggaa
ataaaagaaatcaaaggtatgcgccgggtaacagtatatccgtcagacgcttcactcggc
gaagaacgcgtatatcaaataccctatggcgcacggcttattgtcagcgacggtcaaatg
gtggaggctggtgaccgcctgactgaaggcgcggtcaacccgcatgatattttacgggtc
agcggtcttaaagccacccagcgttatctggtgtatgaagttcagaaagtttataaatcc
cagggcgtagaaattaatgataaacatattgaagtcatggtcaggcagatgctccacaaa
gttaaagtggaagaagccggcgataccgatcttttgcctggtgaatacattgaccttaat
acctttgaagaagaaaatgccaaggctattgaagcaggcggcgagccggccattgcccgg
cctattctcctcggcattaccaaagcttcactggcaaccgactcgtttttgtcggctgct
tccttccaggagactacccgcgtacttactgaggcagcgattaagggtaaggttgatccc
ctgctgggacttaaggagaacgttattatcggtaaacttgttccggccggtaccggcatg
agccgttaccgcaatgtccgtatcaagaagcctgctgtgcagccggaaatcaatgaattt
gccggagaataa
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