Sporomusa carbonis: SCACP_16800
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Entry
SCACP_16800 CDS
T10996
Symbol
rnjA
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scao Sporomusa carbonis
Pathway
scao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCACP_16800 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scao03019
]
SCACP_16800 (rnjA)
Messenger RNA biogenesis [BR:
scao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCACP_16800 (rnjA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XEQ92829
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Position
1698461..1700125
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AA seq
554 aa
AA seq
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MARQPNKVQIIPLGGMGEIGKNMTVVRYGDEIIVIDSGLMFPEDDMLGIDLVIPDITYLL
DNRDLVKAIVLTHGHEDHIGALPYVLKQLNVPVYGTRLTLGILEGRLKENNVAANNLNAV
KPGDQIQIGNFKIGFIRVSHSIADSVALSIKTPVGVIVHTGDFKLDQTPVDGKVTDFHKF
AELGDQGVLVLLADSTNAERPGYTLSEKSVGVTFDETFRNARERIIIASFSSNIHRIQQA
IDTACKHRRKVAILGRSMVNVVSIALELGYLNVPEGVIIDIDEINNYPSSGIVILTTGSQ
GEPMSALTRMAMSDHKKVEIIPGDTVIISATPIPGNEKLVSRTIDFLFRQGAEVVYEATS
GIHVSGHASQEELKLIHNLIRPKFFIPVHGEYRHLIKHAKLAQSLGMPKENVFVAENGQV
LEFTTEKGAITGKVTSGNVLVDGLGVGDVGNIVLRDRRQLSQDGILIVVVTMDKQRGQVA
AGPDIVSRGFVYVRESEQLMEDAKERVKQALEKCELNGVTEWAAIKSNVRDTLGKYLYER
TRRRPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagacaaccaaacaaagtacaaattattcccctgggcgggatgggggagatcggt
aaaaatatgacggtagtccgttatggtgatgaaatcattgtaattgactcgggtttgatg
tttcctgaagacgatatgctgggcattgaccttgttattcctgatattacctatttactg
gataaccgtgaccttgtaaaagccatcgtattaacccatgggcatgaagaccacatcggt
gctttgccttatgtattgaagcagcttaacgtacccgtatatggtactcgcttgacactc
ggaattttagagggacgtttgaaggagaataatgttgctgctaataatttaaatgctgtt
aaacccggagatcaaattcaaatcggcaattttaaaattggttttattcgggtaagccac
agtatcgccgattcggtagcgctgtcaataaaaacgcctgttggtgtcattgttcatacc
ggtgactttaagcttgaccaaactccggtagacggtaaagttaccgactttcataaattt
gccgaactaggtgaccagggtgtattggtacttttagctgacagcactaatgccgaacgt
cccggttatacgcttagtgaaaagtcggtaggagtaacctttgacgagaccttccgaaat
gcgcgggaacggatcattattgcttccttttcttctaatattcatcgtattcaacaggct
atagatactgcttgtaaacaccggcgcaaggtcgccatactcgggcggagcatggttaat
gttgtcagcattgctctagaattgggttatttaaacgttccggaaggcgttattatcgat
attgatgaaataaataattacccttcatcaggaattgttatactgactacaggaagccaa
ggtgagccaatgtcggctctaacacggatggctatgtcggaccacaagaaggttgagatt
attcctggtgacaccgttattatttcagctacacctataccaggaaatgaaaaactggta
tcacgtacgattgattttttgttccgtcaaggggcggaagttgtttatgaagcaacttcc
ggcatccatgtgtccggtcatgccagtcaagaagaacttaagctcatccataaccttatt
cgtccgaagttttttattccggtgcatggtgaataccggcacttgattaaacacgccaag
ctagctcaatcactaggtatgcctaaggaaaatgtttttgttgcagaaaatggtcaagta
cttgagtttactactgagaaaggggcaataaccggaaaagttacatcaggcaacgtttta
gtcgacggcttaggtgttggcgatgtaggcaatatagtactccgtgaccggcgtcaactt
tcgcaggacggtatattaattgtcgttgtcactatggacaaacagcgcggccaggtagct
gccggtccggatattgtttctcgtggttttgtgtatgtgcgtgaatcagaacaacttatg
gaagacgccaaagagcgggttaaacaggccctggaaaaatgcgagctaaatggagtcact
gaatgggctgctattaagtctaatgttcgtgataccttaggcaagtatttgtatgagcgc
actcggcgccgcccgatgatcttgccgataattatggaagtgtaa
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