Sporomusa carbonis: SCACP_23990
Help
Entry
SCACP_23990 CDS
T10996
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scao Sporomusa carbonis
Pathway
scao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCACP_23990 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scao03400
]
SCACP_23990 (ligD_2)
Enzymes [BR:
scao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCACP_23990 (ligD_2)
DNA repair and recombination proteins [BR:
scao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCACP_23990 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF7320
Motif
Other DBs
NCBI-ProteinID:
XEQ93502
LinkDB
All DBs
Position
2356569..2357492
Genome browser
AA seq
307 aa
AA seq
DB search
MPSNSKMKSTIDVAGRKLKIGNLDKIFYPATGFTKGQMLDYYIRIAPVLLPHLANRPLTM
KRYPNGVDGKFFYQKDCPAHRPDWIKTIPVWSGSNSRNINFCNAADLPTLVWAANLAALE
LHTSLSLAPAVTKPTLLVFDLDPGAPATIVDCAEVGLWLKDYFDRHKIRSFPKTSGSKGL
QVYVPLNTPASYDLTKNFARALAIRLQEKHPDRVVANMKKALRAGKVFIDWSQNDEHKTT
VCVYSLRAKDHPTVSTPVTWEEVAAVLKQNKPDSLTFEANQVLDRAAKLGDLFAPVLTLK
QKLPALS
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagtaatagcaaaatgaaatcaacaattgacgttgccgggcgcaaactaaaaatc
ggcaaccttgacaaaatattttatcccgctaccggttttaccaaaggccaaatgctcgat
tactatatccgaatcgcgcctgtcctccttcctcatcttgccaaccgcccactcactatg
aaacgttatcccaatggcgttgacggcaaatttttttatcaaaaggactgcccggctcac
cggcctgactggattaaaaccatcccggtatggagcggcagtaatagccgcaatataaat
ttctgcaatgccgctgacctgccgacactggtatgggcggcaaacctggcggcgcttgaa
ctccacacctctctgtcgctggcgccggctgtcaccaagccaacgctcttggtattcgac
cttgaccccggagcaccggctactatcgtagactgcgccgaggtcggactatggctgaaa
gattattttgaccggcataaaattagaagtttcccaaaaacatcaggctctaagggcttg
caggtctacgtcccgcttaatacgcctgcaagttacgatcttaccaagaattttgccaga
gcgttagctatccgcctgcaggaaaaacaccctgaccgggtagtagccaacatgaaaaaa
gcccttcgcgccggcaaggtgtttattgactggagccagaacgatgagcacaaaactacc
gtctgtgtctactcccttcgcgccaaagatcatccgacagtttccacgccggtaacctgg
gaagaagttgccgccgtactaaaacaaaataaacccgattcgctgacatttgaagccaat
caggtattagaccgcgccgccaagttgggagatttatttgctccggttttaacacttaaa
caaaaacttccagccttatcttaa
DBGET
integrated database retrieval system
