Staphylococcus capitis subsp. capitis: AYP1020_0237
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Entry
AYP1020_0237 CDS
T03970
Symbol
addA
Name
(GenBank) ATP-dependent helicase/nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
scap
Staphylococcus capitis subsp. capitis
Brite
KEGG Orthology (KO) [BR:
scap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scap03400
]
AYP1020_0237 (addA)
Enzymes [BR:
scap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYP1020_0237 (addA)
DNA repair and recombination proteins [BR:
scap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AYP1020_0237 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
ResIII
Dna2
DUF5413
Motif
Other DBs
NCBI-ProteinID:
AKL91387
LinkDB
All DBs
Position
229157..232813
Genome browser
AA seq
1218 aa
AA seq
DB search
MIPTKPNDVIWTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDRLLV
VTFTNLSAREMKHRVDQRIQEASLAEPENEHLKNQRVKIHQAQISTLHSFCLKLIQQHYD
VLDIDPNFRTSSEAENVLLLDQTIDDVLERHYDILDSDFIELTEQLSSDRNDDQFRNIIK
RLYFFSIANPNPFEWLDQLSQPYKNEGQQDQLLKLLNDLAMIFLKAAYEEIIKSFNLFSM
LDNVEKQLEVVEDEHRFVSKVIEGDMINSELLVSHEFVSRFPSITKKIKEANEGMEEALV
DAKKHYDKYKSLVSDVKNDYFSRSAEDLKLDMQKLAPRVAYLAQIVKDVIEEFSKQKRSR
NLLDFADYEHFALQILTNDDGTPSHIAKTYQEHFEEILVDEYQDTNRVQEKILSCIKTGE
EYNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTSEGEGTGMVIDLSQNFRSRQEVLST
TNYLFKHMMDDNVGEIIYDDAAQLYYGAPYDQTDKPVQLRALIEADKETSELTGSEQEAN
YIVEQVKDIIANEQVFDMKTGTYRSATFKDIVILERNTDNARNLQQAFKNSDIPFHVKSK
KGYFEQTEVQLVLSFLKTVDNPLQDIYLVGLMRSVIYQFTEDELAEIRVVSPNDIYFYQS
IQNYIEDDNSKAHLVHKLQRFIKDIKNYQDYSQTQPVYQLIDKFYNDHFVIQYFSGLIGG
KGRRANLYGLINKAIEFENSSFRGLFQFIRFIDELIDRGRDFGEENIVGPNDNVVRMMTI
HSSKGLEFPFVIYSGLSKKYNEKDLTQPVILNQQYGLGMDYYDTDKEMVYPSLSSAAYRA
INRKEHISEEMRLIYVALTRAKEQLILIGRVKKEQELTELEQLPISADLIAVNERLTAKN
SFKFIYSILSKHQSASLPDDQKFERDIETLNSEVKPRVTITIDHYEDVSTEEVTPENERR
TVNDIDDINSGNDDIKAKIHHQLAYRYPYQEDTLKPSKQSVSELKRQLETEESNTNYDRV
RQYRIGVSTYERPRFLSENKKRKANEIGTLMHTVMQHLPFNETRLTREELDSYVDKLIQL
NIIEEDAKADIKYDDIMRFIESSLYLQIAQADKVYTELPFVVNQAMVDQLPEDNQDVSII
QGMIDLIFQKDGKYYFVDYKTDAFNRRKGMTDDEIGQQLKQKYQIQMEYYRNTLETILKQ
PVQGYLYFFKFGMLKIDE
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgataccaactaaacctaatgacgtaatttggactgacgcacagtggcgtagtatatac
gctaaaggtcaagatgtactcgtcgctgctgccgctggttcaggtaaaactgccgtatta
gttgaacgtattattcaacgtattctccgagataatatggacgttgatcgtttactagtt
gtaacatttacaaatttaagtgcgcgtgaaatgaagcatcgcgtagatcaacgtattcaa
gaagcttctcttgcagaacctgaaaatgaacatttaaaaaatcaacgtgttaaaattcat
caggctcaaatttctacattacacagtttttgtttaaaattaattcaacaacattacgat
gttttagatattgatcctaattttagaacaagtagtgaagctgagaatgtcttattatta
gatcaaacaattgacgatgttcttgaacgtcattatgacattttagactcagattttatc
gagttaactgagcaattatcctcagatagaaatgatgaccaatttagaaatattattaaa
cgtttgtacttctttagtattgcgaatcctaatccattcgaatggttagatcagttatct
caaccttataaaaatgaaggccaacaagatcaattgctgaaattacttaatgatttggca
atgatatttcttaaagctgcttatgaagagattataaaaagttttaatttgttctcaatg
ctcgacaatgtggaaaagcaattagaggtagtggaagatgaacaccgctttgtttctaaa
gtgatcgaaggtgacatgattaattctgaattgttggtctcacatgaatttgtaagccgt
ttcccttcaattaccaaaaagattaaagaagcaaatgaaggtatggaagaagcgttagtt
gacgctaagaaacattacgataaatacaaaagtctagttagtgacgtaaaaaatgattat
ttttcaagaagtgctgaagatttgaagttagatatgcagaaattggctcccagagtagcc
tatttagctcaaatcgtaaaagatgtgatagaggaatttagcaagcaaaaacgaagtcgt
aatttattggactttgcagattatgagcattttgccttgcaaatactcactaatgatgat
ggtacgccttcacatatcgcaaaaacgtatcaagaacattttgaagaaatcctagtggat
gagtatcaagatacaaaccgtgttcaagaaaagattttatcttgtattaaaacaggtgaa
gagtacaacggaaacctatttatggtaggtgatgttaagcaatcaatctataaatttaga
caagctgatcccagtctatttattgaaaaatataatcggttcactagtgaaggggaaggt
acaggtatggtcatcgacctatctcaaaacttccgttctagacaagaggtactgtctacc
acaaattatttattcaaacatatgatggacgataacgtaggagaaataatatatgatgat
gcggctcaattatattatggagcaccatacgatcaaactgataaacctgtgcaacttcgt
gcattaattgaagcggataaagaaacgagtgaattgactggaagtgagcaagaagccaac
tacatcgtagaacaagtaaaagatataattgcaaatgaacaagtatttgatatgaagact
ggaacatatagaagtgcaacattcaaagatattgtaatacttgagagaaatactgataat
gcgcgtaatttgcaacaagcttttaaaaatagtgatattcccttccatgttaaaagtaaa
aaaggatattttgaacaaactgaagtacaacttgttttatcatttttaaaaactgttgat
aatcccttacaagatatttatttagtaggactcatgcgttcagttatttatcaattcact
gaagatgaattagcagaaattagagtagttagtcctaacgatatttatttttatcaatcg
attcaaaattatattgaggatgataattctaaagctcatttagttcataaactacaaaga
tttataaaagatataaaaaattatcaagattatagtcaaactcaacctgtttatcagcta
atagataaattttataacgaccatttcgtaatacagtactttagtggtcttattggtggt
aaaggtcgacgtgcaaacctttatggtttaattaataaggctatcgagtttgagaactct
agctttagaggtttgttccaatttattcgatttattgatgaattgatagatagaggaaga
gatttcggtgaagaaaatatagttggaccaaatgataatgttgttagaatgatgaccatt
catagtagtaaaggattagagtttccgttcgttatttattcaggactttctaaaaaatac
aatgaaaaagacctgactcagcctgtaattctaaaccaacaatacggattgggaatggat
tattatgatactgataaagaaatggtttatccatcattatcctcagcagcctatcgcgct
attaatagaaaagagcatatttctgaagaaatgcgtcttatttatgtagcattaactcgc
gctaaagaacaattaattttaataggtagagtcaaaaaagaacaagaattgacagaactt
gaacaattacctatatctgcagatcttattgcagtgaatgagcgcttgacggctaaaaat
tcatttaaatttatttacagtattttatccaaacatcaatcagcatctttacctgatgat
cagaaattcgaacgagatattgaaacacttaattctgaagtgaaaccacgcgtaacgatt
acaattgatcactacgaagatgtatctacagaagaggtcacgcctgaaaatgaacgtcga
acagttaacgatattgacgacattaacagtggaaatgatgacataaaagctaagattcac
catcaattagcatatagatacccttatcaagaagatactttaaaaccttcaaagcagtct
gtatctgaacttaaacgtcaacttgaaactgaggaaagtaacacaaattatgatagagtt
agacaataccgtatcggcgtatcaacatatgaacgaccaagatttttaagtgaaaataag
aaacgtaaagccaatgaaattggtacgttaatgcacacagtcatgcaacatcttcctttt
aatgaaacaagattaactagagaagagctagattcatatgttgataagctgattcaactt
aatatcattgaagaggatgccaaagctgatattaaatatgatgatattatgagatttatt
gaaagttcattgtatttacaaattgcacaagcagacaaagtatatactgaattgccgttt
gtagttaatcaagctatggtcgatcaattacctgaagataatcaagacgtttcaattatc
caaggtatgattgatttaattttccaaaaggatggaaaatactatttcgttgattataaa
acagatgcatttaatcgacgaaaagggatgactgatgatgagattggtcaacaactcaaa
cagaaatatcaaatccaaatggagtattaccgtaatacgttagaaactatactcaaacag
ccggttcaaggttatctatatttctttaaatttggtatgttaaagatagatgaataa
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