Staphylococcus capitis subsp. capitis: AYP1020_0413
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Entry
AYP1020_0413 CDS
T03970
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scap
Staphylococcus capitis subsp. capitis
Pathway
scap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYP1020_0413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scap03019
]
AYP1020_0413
Messenger RNA biogenesis [BR:
scap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYP1020_0413
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKL91561
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All DBs
Position
complement(396534..398273)
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AA seq
579 aa
AA seq
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MKQLHSNEVGVYALGGLGEVGKNTYAIEYKNEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLIRNKLEEHHLLRTTELH
EIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGEPANIAK
MAKLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINNIPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGQTGVECGVDEDNVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNGNKDIQWHQIKSSIIETLQPYLY
EKTARRPMILPVIMKVNEDKGNNKPSNKKNNKQDKNESK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaattacattctaatgaagtaggtgtgtatgcacttggtggtttaggtgaagtt
ggtaaaaatacctacgccatcgagtacaagaatgaaattgttatcattgatgcaggtatt
aaattcccagatgataacttactaggaatagattatgttattcctgactacacttactta
gaacagaaccaagacaaaattgtaggtctgtttattactcatggacacgaagaccatata
ggtggtgtgcccttcctattaaaacaaattaatgtacctatttacggtggtccattagca
ttaggtctcatacgcaataaattagaagaacatcatttacttagaactactgagttacat
gaaattgatgagagtagtgtaataaaatctaagcattttgaaatatcattctatttaact
actcatagtattcctgaagcatacggagttatcgttgatacaccagaaggtaaaattgtt
catactggcgactttaagtttgatttcactccagttggagagccagctaatatagctaaa
atggctaaacttggagaagaaggcgtactatgtttattatctgactcaacaaattcacta
gtacctgattttacgcttagcgaacgtgaagttggacaaaacgttgataagatttttaga
aattgcaagggccgtatcatttttgcgaccttcgcatctaatatttatcgtgtacaacaa
gcagttgaagcagcgataaagtataatcgtaaaatcgttacttttggtcgttcaatggaa
aataacataaaaattggtatggagcttggatatattaaagcaccacctgaaacatttgtt
gaacctaataaaattaacaatatacctaaacacgaattgttaattctttgtactggttca
caaggtgaaccaatggctgcattatcaagaattgcaaatggtacacataaacaaatcaaa
attatacctgaagatactgttgtattcagttcatctcctattccaggtaacactaaaagt
atcaatcgcactataaatgctttatataaagctggtgcggatgtcattcacagtaagatt
tcaaatattcacacgtcaggtcatggttcacaaggtgaccaacaattgatgctacgttta
attcaacctaagtatttcttacctattcatggtgaatatcgtatgttgaaagcacatggt
caaacgggtgttgaatgtggtgtagatgaggataatgtatttattttcgatatcggtgat
gtcttagctttaacacatgattcagctcgtaaagctggaagaatcccatcaggtaatgtg
ttagtagacggtagcggtattggagatatcggaaatgtagttattagagatcgtaaacta
ctttctgaagaaggtttagtcattgttgttgtaagtatcgattttaatactaataagtta
ttatcaggacctgatatcatttcacgtggctttgtttatatgcgcgaatccggtcaactt
atttatgacgcacaacgtaaaattaaaacagacgtgatatctaaattaaatggtaacaaa
gatattcaatggcatcagattaaatcatcaattattgaaacacttcaaccttatctatat
gaaaagacagctcgtagaccgatgattttaccagtaattatgaaagtgaatgaagataaa
ggtaacaataaaccttctaataagaaaaataacaaacaagataaaaatgagtctaaataa
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