Staphylococcus capitis subsp. capitis: AYP1020_0912
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Entry
AYP1020_0912 CDS
T03970
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
scap
Staphylococcus capitis subsp. capitis
Pathway
scap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYP1020_0912 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scap03400
]
AYP1020_0912 (recD)
Enzymes [BR:
scap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AYP1020_0912 (recD)
DNA repair and recombination proteins [BR:
scap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYP1020_0912 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
AAA_22
nSTAND3
HHH_3
AAA_14
AAA
Mg_chelatase
AAA_29
Rad17
T2SSE
TsaE
AAA_28
NPHP3_N
DUF815
Zeta_toxin
AAA_12
SLFN-g3_helicase
PIF1
AAA_16
AAA_18
RsgA_GTPase
ABC_tran
5_3_exonuc
L_lactis_ph-MCP
NACHT
AAA_6
Motif
Other DBs
NCBI-ProteinID:
AKL92058
LinkDB
All DBs
Position
complement(945635..948085)
Genome browser
AA seq
816 aa
AA seq
DB search
MSDPTLFDKSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDV
YTFKGQIVEHPRYGKQLKAETFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNALGEN
AINDILNNPEVLEKVPSLPKKKQKQIAEQISSNQESEKIMIRLHDLGFGPKLSMAIYQFY
MGETLKILDENPYQLVYDIKGIGFNKADQLARNIGIAADSEERLKAGLLYTLEEECIKQG
HTYLPNSYVIESTQTMLNDSSEVVISTKMLEQKIEQLSEEKKLIQSEEQVSIPSLYYSEL
KSVQNLYRIQANNKKLKEIEQSDLQMHIGEIESLNQVNYATSQKEALETAINSKVMLLTG
GPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLAAPTGRASKRLQESTGLEAMT
IHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIDSKRIPRVNLTEVYRQQDGSSIVDLAHRMKVGEPIDITQRFHDRSF
INCTSDQIPDVVDKVVKSAVSKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKEKDS
REIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVIVVDFEGNEI
TFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFDIGLKTKGQERLTQLNHLLKSYFGDEQEVIGSSGHSSVNSTEKHDTTQTEEENA
TTDAPHNDIVLSETTIFKIDPMINMGEMTPYDFAEH
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccctacactttttgataaatcaatgatcaaaggtactgtagatgctatatta
tttcaaaataatgataatttctatacagttcttaaagtagacacgattgaaacgaatgag
tcctttgatagcatgccaactgttgtagggtttcttccaaatgtagttgaaggagacgtc
tatacgtttaaagggcaaattgtcgaacacccacgttatggtaaacagttaaaagctgaa
acttttgaaaaggaacttccacaaaccaaagatgcaattattagttatttatcaagcgat
ttatttaaaggaataggaaaaaaaacagctcaaaatattgttaatgcattaggcgagaat
gcaatcaatgatatattaaataatcctgaagtgttagaaaaagtccctagtttacctaag
aaaaagcaaaagcagattgcagaacaaataagttcgaatcaagaatcagaaaaaataatg
attcggttacatgatttaggatttggtcctaaactttcaatggcaatttatcagttttat
atgggagaaacattgaaaatactagacgaaaatccttatcaactcgtttatgatattaaa
ggaataggttttaataaagctgatcaattagcgcgaaacattggtattgcagcagattct
gaagagcgtttgaaagcaggattgctttatacacttgaagaagaatgtatcaaacaaggg
catacatatttgcctaattcatatgtgattgaatcaacgcaaactatgcttaacgatagc
tctgaagttgttatttctactaaaatgctagagcaaaagattgagcaactctctgaagag
aaaaaattgattcaaagcgaagaacaagtttcaattccaagtttgtattattcggaatta
aagagtgttcaaaatctttatcgtattcaagctaataataaaaagttaaaagaaatcgaa
caatcagatttacaaatgcatattggtgaaattgagtcactaaatcaagtaaattatgca
acttcacagaaagaggctttagagacggcaatcaattcaaaagtgatgcttcttacaggt
ggccccggtactggtaaaactactgtcattaaaggcatcgtagagctttatgcggaaata
catggattatcattggattatgatgattacaacgaggatgattatccagttgtacttgct
gcaccaactggacgcgcatctaaaagacttcaggaatctactggattagaagcaatgaca
attcaccgtttaataggttggaatcaagaaacacaacctgaagatattttagataatgaa
attaatgcacggcttatcattatagatgaaatgtctatggtagatacatggttatttcat
caatttttaagtgctgttccattagatgctcaaattgtatttgtaggagatgaagaccaa
ctcccttcagttggaccgggtcaagtgtttaaagacctcattgattctaaaagaattccg
cgtgttaatcttacggaagtgtatcgccaacaagatggctcaagtattgttgatttagca
catcgtatgaaagtaggcgaacccatagatataactcaacgttttcacgatcgcagtttc
attaactgtacttcagaccaaatacctgatgtagtagataaagtagttaaaagtgcagtg
agtaaagggtataatatgagtgatattcaagtccttgctcctatgtataaaggtaatgca
ggaataaaacgtctcaatcaagtattacaatctattttaaatccaaaggaaaaagatagt
cgtgaaattgaattcggagatgttgtatttcgtaaaggagataaagtacttcagttggtc
aatagacctaatgacaatatatttaatggtgatattggtgtaattgtaggcatattttgg
gctaaagaaaatgctcttaataaagatgtaatagtagtagattttgaaggaaatgaaatt
acctttactcgacaagatttacttgaacttactcatgcttattgtacatctattcataaa
tctcaagggtcagaatttccaattgttattatgcctatagttaaacaatactttcgtatg
ttacaaagacctatcctttatacgggtctgacccgtgctaagcaatcacttgttttactt
ggggatccccaagcatttgatataggactgaagacaaaaggccaagaacgtttaactcag
ttgaatcacttattaaaatcttattttggtgatgagcaagaagttataggtagttcaggt
cattcatctgtaaatagcactgaaaaacatgatactacacaaactgaagaagagaacgca
acaactgacgcaccacataatgacattgttcttagtgaaaccactatatttaaaattgat
cctatgattaatatgggagaaatgacgccttacgattttgccgagcattga
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