Staphylococcus capitis subsp. capitis: AYP1020_0927
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Entry
AYP1020_0927 CDS
T03970
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scap
Staphylococcus capitis subsp. capitis
Pathway
scap03410
Base excision repair
scap03430
Mismatch repair
scap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AYP1020_0927 (recJ)
03430 Mismatch repair
AYP1020_0927 (recJ)
03440 Homologous recombination
AYP1020_0927 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scap03400
]
AYP1020_0927 (recJ)
DNA repair and recombination proteins [BR:
scap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AYP1020_0927 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AYP1020_0927 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYP1020_0927 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
AdoHcyase
Motif
Other DBs
NCBI-ProteinID:
AKL92073
LinkDB
All DBs
Position
complement(963997..966270)
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AA seq
757 aa
AA seq
DB search
MIKSRYHWDLAQPTEYITDDLAKKLKLSPIVKKVLESKNLVQENNILDVLEDKVLDHDPW
LLSDMQKAIDRINLAIDKNERILVYGDYDADGVTSTTILVNTLQQLGAQVGWYIPNRFSE
GYGPNEHAFRNAYDEGISLIITVDNGIQGHDEIKMVQDLGVDVIVTDHHEIGRTLPEALA
IVHPMHPDFDYPFKYLCGAGVAYKLSQALLSHPPQQFIALAAIGTIADLVSLTDENRSIV
KRGLKILNEQTPVSINAILKQAGYNDQINEETIGFIIGPRLNAVGRLEDASLAAELLMVD
EFEEAEFLAEQVEHFNQERKDIVAEITEEALSLAEEQVQQGNLFLLLAKENWHEGVLGIV
ASKIVETYALPTLILNIDLEQNHAKGSARSIEQVSMFEILNAHQDLITKFGGHHMAAGMT
MDIENIDELRKGLNEWMKQLSESTSLAPRKHVDVLLNESEITVKNIQDIQKLRPFGTDFN
SPTFEVNDLNVKSIKAIGQEGKHLKVALGENQLAALYWSYGHLAKEIEMGQPLNLIGNLQ
INEWNGNQSPQLIIQDIATETIQILDYRSKRKHLQFTENNSNTAYVIHPKKDKPNEHHYY
YGETIESQYDKVVLRDLPITMNEIEETLKQLQFSQLYLVLQHDQSIYFEGMPSKALFKEC
FKALINKQETNLAKEGMMLCEFLKVKPEILKFMLKVFNELNFIYNEDGLIKINSHSSKKD
IETSRLYQLRQSRIEVEKRLLYDDFSNIKNWIKSQLS
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatcaagatatcattgggatttagcccagccaactgaatacataacagatgat
cttgctaagaaacttaagctttcacctattgtaaaaaaagttttggaaagcaagaatcta
gttcaagaaaataatattttagatgtattagaagataaagtacttgaccatgacccttgg
ttattaagtgatatgcaaaaagcaattgatcgcataaatttagctattgataaaaatgaa
cgtattttagtctatggtgattatgatgctgatggtgtcacttcaacaactattcttgtt
aatacattacagcaattgggtgctcaagtaggatggtatattcctaatcggttttctgaa
ggttatggacctaatgaacatgcctttcgtaatgcatatgatgaggggatctcactaatc
attacagtggataatggaatacaagggcatgatgaaattaaaatggttcaagacctcggt
gtggatgtcattgtgacagatcatcatgagatcggacgtactttaccagaggcattagcc
attgtacatcctatgcacccggattttgactatccgttcaaatatctttgtggtgctggt
gtggcatataagctatcgcaagctttattaagtcatccgcctcagcaatttatagcatta
gcagctataggaacgattgcagatttagtttcattaacagatgaaaaccgttcaatagtt
aaaagaggattgaaaatattaaatgaacagacgcctgtttctatcaatgctatattgaaa
caagcaggttataatgatcaaattaatgaagaaacgattgggtttatcattggacctcga
ctcaatgcggtaggtagattagaagatgcatcactagctgctgaattattaatggtagat
gagtttgaggaagcagaatttttagctgaacaagtggagcatttcaatcaagaaagaaaa
gatattgtagcagaaattactgaagaggcgctttcattagctgaggaacaagttcaacaa
ggaaatttatttttattattagctaaagagaattggcatgaaggagtactcggtattgta
gcatctaagattgttgaaacttatgctctgccaactctaatcttgaatattgatttagag
caaaatcatgctaaaggctctgctcgttcgatagaacaagtgtcaatgtttgaaattttg
aatgctcatcaagatttaattactaaatttggtggtcatcatatggctgctggtatgact
atggatatagaaaatattgatgaactacgaaaaggtcttaacgagtggatgaagcaactt
tcagaatcaacatctttagcaccacgtaaacatgtagatgtactgctcaatgagagtgaa
attactgttaaaaatatccaagatatacaaaaattgcgtccttttggtacagactttaat
agtcctacatttgaagttaatgatttaaatgttaaatcgattaaagctataggccaagaa
ggtaaacatttaaaagtggcacttggagagaatcaattagcggcactttactggagttat
ggacatcttgctaaagaaatcgaaatggggcaaccacttaatttaataggtaatcttcaa
atcaatgaatggaatggaaatcaatcaccccaattaattattcaagatattgctacagaa
acaatacaaatcttagattatcgaagcaaacgtaagcatcttcaattcactgaaaataat
tctaatacagcatatgtgattcatcctaaaaaggataaacccaatgagcatcattattat
tatggtgaaactatagaatcacaatatgataaagtagttctcagagatttacctataaca
atgaatgaaattgaagaaacgcttaaacaattacaattttcccagctttatcttgtttta
caacatgatcaatcaatttattttgaaggtatgccaagcaaagcattgtttaaagaatgt
tttaaagctttaattaacaaacaagaaacaaatttagctaaagagggtatgatgttgtgt
gagtttttaaaagttaagccagaaatattaaagtttatgcttaaagtttttaatgagctt
aattttatttacaacgaggatggtcttattaaaataaattcacactctagtaaaaaagat
atcgagacgagtcgtctttaccaattaagacaatctcgaatagaagtagaaaaaagatta
ctgtacgatgacttttcaaatattaagaattggataaagtctcaattgagttaa
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