Staphylococcus capitis subsp. capitis: AYP1020_2291
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Entry
AYP1020_2291 CDS
T03970
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scap
Staphylococcus capitis subsp. capitis
Pathway
scap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYP1020_2291 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scap03021
]
AYP1020_2291 (rpoC)
03400 DNA repair and recombination proteins [BR:
scap03400
]
AYP1020_2291 (rpoC)
Enzymes [BR:
scap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYP1020_2291 (rpoC)
Transcription machinery [BR:
scap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYP1020_2291 (rpoC)
DNA repair and recombination proteins [BR:
scap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYP1020_2291 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AKL93359
LinkDB
All DBs
Position
2350595..2354218
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFREYYDKYPNQFVAKMGAEGIKDLLE
EIDLDEELKLLRDELESATGQRLTRAIKRLEVVESFRNSGNNPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVITEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNDTNEVLKAYANGHVHLHTRIGVH
ASSFNNPTFTDAQNSKILVTSVGKIIFNEIIPDSFAYINEPSQANLEDTTPDKYFIDPTQ
LGEGGLKEYFENEELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVSDIVVLPDKQDILDEHEKLVERVTKQYNRGLITEDERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEVIIRPDELITADIAKKITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRLKVEVGQ
SVARGEVLTEGSIEPKNYLAVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHSFTDANREAFKHRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVQYDKTSAPVADVT
EDVEITE
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaataggattagcttcacctgaaaaaatt
cgttcatggtcttatggtgaagttaagaaacctgaaacaattaactatcgtactttaaaa
ccagaaaaagatggtcttttctgtgagagaatttttggacctacgaaagactgggaatgt
agttgtggtaagtacaaacgtgtacgctacaaaggtatggtatgtgacagatgtggcgtt
gaagtaactaaatcaaaagtgcgtcgtgaaagaatgggacacattgaattagcagcacct
gtatcacatatttggtatttcaaaggaattccaagtcgtatgggtctattgctagacatg
tctccaagagcattagaagaagtcatctacttcgcttcttatgttgtagtagatccaggc
cctactggattagagaagaaaacattattatctgaagcagagttcagagaatattatgac
aaatatcctaatcaattcgtagctaaaatgggtgctgaaggtattaaagacctattagaa
gaaattgatttagatgaagaactaaaactattacgtgatgagttagagtctgctactggt
caaagactaactcgtgcaattaaacgtttagaagtggttgaatcattcagaaattcagga
aacaatccttcatggatgattttagatgtacttccaatcatcccacctgaaattcgtcca
atggttcaattagacggtggacgttttgctacaagtgatttaaacgacttatatcgtcgt
gtaatcaaccgtaacaatcgtttgaaacgtttattagacttaggtgcacctggcatcatc
gttcaaaacgaaaaacgtatgttacaagaagcagtagacgctttaattgataacggacgt
cgtggtcgtccagttactggaccaggtaaccgtccattaaaatcactttcacacatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcaggt
cgttcggttatcgccgttggaccaagtttaaaaatgtatcaatgtggattacctaaagaa
atggcacttgaactatttaaaccattcgttatgaaggaattagttcaacgtgaaattgct
acaaatatcaaaaatgcgaaaagtaagatcgaacgcatggatgatgaagtttgggatgta
ttagaagacgttatcactgaacacccagtattacttaaccgtgcaccaacgcttcataga
cttggtatccaagcatttgaaccaacattagttgagggtcgtgcaatccgtcttcaccca
cttgtaacaacagcttacaatgcggactttgacggtgaccaaatggcggttcacgtacca
ttatcaaaagaagcacaagctgaggcgcgtatgttaatgcttgcggcacaaaacatcctt
aacccgaaagatggtaaaccagttgttacaccatctcaggatatggtattaggtaactac
tatttaacattagaacgtaaagatgctgttaatactggtgcgattttcaatgacactaat
gaagtattaaaagcttatgcgaacggtcatgtacacttacacactcgtattggtgtgcat
gcaagctcattcaacaacccaacgttcacagatgctcaaaatagtaaaatcttagttact
tcagtaggtaaaattattttcaatgaaatcattcctgattcatttgcatatattaatgaa
cctagtcaagcaaatttagaagatactacgccagataaatacttcatagatccgactcaa
ttaggtgagggtggcttaaaagaatactttgaaaatgaagaacttattgagccattcaat
aagaaattcttaggaaacatcattgctgaagtattcaatagatttagtattactgacaca
tctatgatgttagatagaatgaaagacttaggtttcaaattctcatctaaagctggtatt
actgttggtgtatctgacattgtggtacttccagacaaacaagatatcttagatgaacat
gaaaaattagttgaacgtgtaactaaacaatataatcgtggtttaatcactgaagatgaa
cgttataacgctgttgttgaaatttggactgacgcaaaagaccaaattcaaggcgaatta
atgcaatctcttgagaaaacaaaccctattttcatgatgagtgattctggtgcccgtggt
aacgcatctaacttcacgcaattagcaggtatgcgtggattaatggctgcaccatcaggt
aaaattatcgaattgccaatcacatcttcattccgtgaaggtttaacagtattagaatac
ttcatctcaactcacggtgctcgtaaaggtcttgccgatacagctcttaaaacagctgac
tctggttaccttactcgtcgtcttgttgacgttgcgcaagatgttatcgtacgtgaagaa
gactgtggcactgaccgtggtttattagtttctgatatcaaagaaggtacagaaatgatt
gaaccatttattgaacgtatcgaaggtcgttattctaaagaaacaattcgtcatcctgaa
actgatgaagtaatcattcgtccagacgaattaattactgcagatatcgctaagaaaatt
actgatgctggtattgaacaaatgtacatccgctcagcgtttacttgtaacactcgtcac
ggtgtttgtgaaaaatgttacggtaaaaaccttgctacaggtgaaaaagttgaagtcggt
gaagcagttggtacgattgccgctcaatcaatcggtgagccaggtacacagcttacaatg
cgtacattccacactggtggggtagcaggaagcgatatcactcaaggtcttccacgtatc
caagaaatcttcgaagcacgtaaccctaaaggacaagcggttattactgaaatcgaaggt
gtagtagaagacattaaattagctaaagatcgccaacaagaaattgttgttaaaggtgct
aacgaaactagatcatatctagcttcaggtacttcaagacttaaagttgaagttggtcaa
tcagtggcacgtggtgaagttcttactgaaggttcaattgagcctaaaaactacttagca
gtagcaggacttaatgcgactgaaagttacctattaaaagaagttcaaaaagtttaccgt
atgcaaggtgttgaaatcgacgataaacacgttgaagttatggttagacaaatgttacgt
aaagttcgtatcattgaagctggtgacactaaattattaccaggttctcttgtggacatt
cacagctttacggatgctaacagagaagcctttaaacaccgtaaacgtccagcaactgct
aaaccagtattgcttggtattacaaaagcttctcttgaaactgaaagcttcttatcagct
gcgtcattccaagaaacaacacgcgttcttacagatgcagcaattaaaggtaaacgcgat
gacttacttggacttaaagaaaacgttattatcggtaagctaatcccggcaggtactggt
atgagacgttacagtgatgttcaatatgataaaacatcagctcctgtagcagatgtaact
gaagatgttgagattactgaataa
DBGET
integrated database retrieval system
