Staphylococcus casei: QMO72_09185
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Entry
QMO72_09185 CDS
T09326
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scaq
Staphylococcus casei
Pathway
scaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMO72_09185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scaq03019
]
QMO72_09185
Messenger RNA biogenesis [BR:
scaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QMO72_09185
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WJE85590
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Position
1900645..1902507
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AA seq
620 aa
AA seq
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MKQIHKNEVAVYALGGLGEIGKNTYAVEYQDEIVIIDAGIKFPDDNLLGIDYVIPDFTYL
EQNQDKIVGLFITHGHEDHIGGVPYLLKQINVPIYGGPLALGLIRNKLEEHHLLRTAELI
EIDESSVIKSKHFEVGFYLTTHSIPEAYGVIVKTPEGNIVHTGDFKFDFTPVGEPANIAK
MAKLGEEGVLCLLSDSTNALVPDFTLSEREVGQNVEKIFRNCTGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINTVPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYRAGAEVIHNKV
SNIHTSGHGSQGDQQLMLRLIRPKYFLPIHGEYRMLKAHGQSGIECGVDPDNVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFKTNTL
LSGPDIISRGFVYMRESGQLIYDAQRRIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLF
EKTARKPMILPVIMKVNEDTNQPSSNKVNHKNDKPKKVQSKTQPKPQVNKAKKETNNNKK
VNQSPKPKKDETNNHTSSES
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaattcataaaaatgaagttgcggtttatgcgcttggtggtttaggtgaaatt
ggtaaaaacacttatgccgttgagtatcaagatgaaatcgttatcattgatgcaggaatt
aaattcccagatgataacttattaggaattgactatgtcattcctgatttcacttattta
gagcagaaccaagataaaattgttggtctgtttatcactcacggacatgaagaccatata
ggtggtgtgccctacctattaaagcaaattaatgtgcctatctatggtggaccattagct
ttaggtttaattagaaataaactagaagaacatcatttattaagaacagcagaacttata
gaaatagacgaaagtagtgttattaaatccaagcattttgaagttggtttctacttaaca
acacatagtattccagaagcttatggtgtgattgtcaaaacacctgaaggtaatattgtg
catactggtgatttcaaatttgatttcactccagtcggcgagcctgcaaacattgctaaa
atggcaaaattaggagaagaaggtgtgctttgtttactttctgactctacgaacgcttta
gttccagacttcacattgagcgaacgcgaagtaggccaaaatgtagaaaaaatcttccgt
aattgtactggaagaattatatttgctacttttgcttccaacatttaccgtgttcaacaa
gctgttgaggctgcaattaagtataatcgtaagattgtcacttttggtcgttcgatggaa
aacaacattaaaatcggtatggagcttggttatatcaaagccccacctgaaacattcgtt
gaacctaataagattaacactgttccaaagcatgaattattaattctttgtacagggtca
caaggtgagccaatggcagcattatcaagaatcgccaacggtacacataaacaaatcaaa
atcatccctgaagatactgttgtattcagttcttcaccaattccaggtaatacgaaaagt
attaaccgtactattaattcgttgtatcgtgctggcgcagaagtcattcacaacaaagtt
tccaacatccatacatcgggtcacggctctcaaggtgatcaacaattgatgctacgtctt
atcagaccgaaatacttcttacctattcatggtgaatatcgtatgttaaaagctcatggt
caatctggtattgaatgtggcgttgatcctgataacgtatttatcttcgacattggcgac
gtactagcattaacacatgattctgctagaaaagccggcagaatcccatctggaaacgta
ttagttgatggtagtggtataggagatatcggtaatgttgttatacgtgatcgtaagcta
ttatcagaagaaggccttgtcattgttgtagtcagtattgatttcaaaacaaatacttta
ctatctggacctgacatcatatcacgtggctttgtatatatgcgtgaatctggtcaatta
atttacgatgcacaacgaagaatcaaaacagatgtgatttctaaattaaaccaaaataaa
gatatccaatggcatcaaattaaatcatcaatcattgaaacattacagccttatttattt
gaaaaaactgctcgtaaaccaatgattttacccgttattatgaaagtaaatgaagatacg
aaccagccatcttcaaacaaagttaatcataaaaatgataaacctaaaaaagttcaatca
aaaacgcaaccaaaaccacaagtaaataaagctaaaaaagaaacaaataataacaaaaaa
gtaaatcaatctccaaaacctaaaaaagatgaaactaataatcatacatcatctgaatca
tag
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