Staphylococcus casei: QMO72_11705
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Entry
QMO72_11705 CDS
T09326
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scaq
Staphylococcus casei
Pathway
scaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QMO72_11705 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scaq03021
]
QMO72_11705 (rpoC)
03400 DNA repair and recombination proteins [BR:
scaq03400
]
QMO72_11705 (rpoC)
Enzymes [BR:
scaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QMO72_11705 (rpoC)
Transcription machinery [BR:
scaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QMO72_11705 (rpoC)
DNA repair and recombination proteins [BR:
scaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QMO72_11705 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WJE87713
LinkDB
All DBs
Position
complement(2394960..2398556)
Genome browser
AA seq
1198 aa
AA seq
DB search
MKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECSCGKYKRVR
YKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEEVI
YFASYVVVKPGPTGLEQKTLLSEAEFRDYYDKFPGQFTAKMGAEGIKELLEEIDLDAELK
SLRDELESATGQRLTRAIKRLEVVESFRHSGNNPAWMILDVLPIIPPEIRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKEMALELFKPF
IMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIREHPVLLNRAPTLHRLGIQAFEPT
LVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTLERKDSVNTGTIYNDTNEVLKAYANGYVHLHSRIGVHAGSFNNPTF
TEEQNKKILLTSVGKVIFNEIIPESFAYINEPTQANLEGVTPDKYFVTATELGEDGLKAY
FDQAPLIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVSDIVV
LPDKKDILDEHEKIVDNITKQFNRGLITEFERYNAVVETWTAAKDQIQGELMQSLDKTNP
IFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARK
GLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEG
RYSKETVRHPETDEIIIKPDELITAEIAKQITDAGFEQMYIRSAFTCNTRHGVCEKCYGK
NLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNP
KGQAVITEIEGVVDDIKLAKDRQQEIVIKGANESRSYLASGTSRLKVEIGQSVERGEVLT
EGSIEPKNYLSVSGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGD
TKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSAASFQETTRV
LTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYRDVKYDKKAPEQTVSEEIQTTEV
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataggacttgcttcacctgaaaaaatccgttcatggtcttttggtgaggttaaa
aagccagaaacaattaactatcgtactttaaaaccagaaaaagatggtcttttctgtgaa
agaatattcggacctacaaaagattgggaatgtagttgtggtaaatacaaacgtgtacgt
tataaaggtatggtttgtgacagatgtggagttgaggtaactaaatctaaagtgcgccgc
gaaagaatgggacacattgaattagctgcaccagtatcacacatttggtacttcaaaggt
attccaagtcgtatgggtctattattagacatgtctccaagagcattagaagaagttatt
tatttcgcttcttatgttgttgttaaaccaggtccaactggattagaacaaaagacattg
ttatctgaagcagaattcagagactattacgacaagttcccgggccaattcacggctaaa
atgggtgctgaaggtattaaagaattacttgaagaaatagacttagatgctgaacttaaa
tcattacgtgatgagttagagtctgcaacaggtcaaagacttactcgtgcaatcaaacgt
ttagaggtagttgagtcattcagacattctggaaataatccagcgtggatgattttagat
gtacttccaattatcccgcctgaaattagaccaatggttcaattagatggtggacgtttt
gctacaagtgatttaaatgatttatatcgtcgtgttattaaccgtaacaatcgtttaaaa
cgtttattagacttaggtgctcctggcatcatagttcaaaatgaaaaacgtatgttacaa
gaagctgttgatgcacttatcgataatggtcgtcgtggccgtccggtaacaggaccaggt
aaccgtccattaaaatcactgtcacatatgttaaaaggtaagcaaggacgtttccgtcaa
aacttattaggtaaacgtgttgactattcaggtcgttcagttattgcagttggaccaagc
ttgaaaatgtatcaatgtggtctacctaaagaaatggcacttgaattgttcaaacctttc
attatgaaagaacttgtacaacgtgaaattgctactaacattaaaaatgctaagagtaag
atagagcgtatggatgatgaagtttgggatgtattagaagatgttattcgtgaacaccca
gtacttttaaaccgtgcacctacacttcacagattaggtatccaggcatttgaaccaaca
ttagttgaagggcgtgcaatacgtctacatccacttgtaacaacagcttacaacgcggac
tttgatggtgaccaaatggctgtccatgtaccgttatctaaagaagcgcaagctgaagca
cgtatgttaatgttagctgcacaaaatatcttgaaccctaaagacggtaaaccagttgtt
acgccatcacaagatatggtacttggtaactattaccttactttagagcgtaaagattca
gtcaatactggtacaatttacaatgatacgaacgaagtattaaaagcttatgctaatggt
tatgttcacttacattctcgtattggtgttcatgcgggttcattcaacaatccaacgttc
actgaagagcaaaacaaaaaaatcttattaacttctgttggtaaagtaatattcaatgaa
atcattccagagtcatttgcttatattaacgaaccaactcaagccaatttagaaggtgta
acacctgataaatactttgttactgcaactgaacttggagaagatggattgaaagcctac
ttcgatcaagcgccgttaattgaaccatttaataaaaaattcttaggtaatatcattgct
gaagtatttaaccgtttcagcattacagatacgtctatgatgttagatagaatgaaagac
ttaggtttcaaattctcatctaaagcaggtatcactgttggtgtatctgatatcgtggtt
ttaccagataaaaaagatatcttagacgagcatgaaaaaattgttgataatataactaaa
caatttaaccgtggtttaatcactgaatttgaacgttataacgcagtagttgaaacttgg
acagctgctaaagatcaaattcaaggtgaattaatgcaatcacttgataaaaccaaccca
atctttatgatgagtgattccggtgcccgtggtaacgcatctaactttacacagttagct
ggtatgcgtggactaatggcagcaccatcaggtaagattatagaattaccaatcacatct
tctttccgtgaaggtttaacggtgttagagtacttcatctctacccatggtgcgcgtaaa
ggtcttgccgatacagcacttaaaactgccgattcaggttaccttactcgtcgtcttgtt
gacgttgcacaagatgttatcgtacgtgaagaagattgtggaactgaccgtggtttatta
gtttctgatatcaaagagggtacagaaatgattgaaccatttatcgagcgtatcgaaggt
cgttattctaaagaaacagttcgtcatccagaaactgatgaaattatcatcaaaccagat
gaattaattactgcagaaatagcgaaacaaattacggatgctggttttgaacaaatgtat
attcgctcagcatttacatgtaatacacgtcatggtgtatgtgaaaaatgttatggtaaa
aaccttgcaactggtgaaaaagttgaagttggtgaagcagttggtacaattgctgcccaa
tcaattggtgagccaggtacacagcttacaatgcgtacattccatacaggtggtgtagca
ggtagtgatatcacacaaggtcttccacgtatccaagagattttcgaagcacgtaaccct
aaaggtcaagcagtgattactgaaatcgaaggtgtcgtagatgacatcaaacttgcgaaa
gaccgtcaacaagaaatcgttattaaaggtgcaaatgaatcaagatcataccttgcttca
ggtacatcaagattgaaagttgaaattggtcaaagcgtcgaacgcggtgaagttctaact
gaaggttctatcgagcctaagaactatttatcagtttcaggtttgaatgcaacagaaagt
tatttactaaaagaagttcaaaaagtttaccgtatgcaaggtgtggaaattgatgataaa
cacgttgaggttatggtaagacaaatgttacgtaaagtacgtatcattgaagctggagat
actaagttacttccaggttcattagtagatattcacaactttactgatgcaaaccgtgaa
gcatttaaagagcgtaaacgccctgcaacagctaaaccggtattattaggtattacaaaa
gcgtctcttgaaacagaaagtttcttatcagcagcttcgttccaagaaacaacgcgtgta
cttactgatgctgcaattaaaggtaaacgtgatgacttactcggtcttaaagagaatgtt
atcatcggtaaattaattccagctggtactggtatgagacgttacagagacgttaaatac
gataaaaaagcacctgaacaaacagtttctgaagaaattcaaacaactgaagtataa
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