Staphylococcus caprae: DWB96_04265
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Entry
DWB96_04265 CDS
T06252
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scar
Staphylococcus caprae
Pathway
scar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWB96_04265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scar03019
]
DWB96_04265
03009 Ribosome biogenesis [BR:
scar03009
]
DWB96_04265
Enzymes [BR:
scar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DWB96_04265
Messenger RNA biogenesis [BR:
scar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DWB96_04265
Ribosome biogenesis [BR:
scar03009
]
Prokaryotic type
rRNA helicases
DWB96_04265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
Flavi_DEAD
Cas3-like_C_2
AAA_19
INTS5_N
Motif
Other DBs
NCBI-ProteinID:
QDW93484
LinkDB
All DBs
Position
907937..909466
Genome browser
AA seq
509 aa
AA seq
DB search
MQNFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPL
IEKVVGQEGVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQIKALKRGP
QIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPADQRQTML
FSATMPKAIQELVQQFMKTPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNG
RRMNALRPPHRKEVLKAREDDIKEKVQNWMSKDNEARLQRIASELLEEYDSVELVASLLQ
ELVEANDEVEVQLTFEKPLARKGRNNKGGSRRGNNKRGNGKFDNKNRRSKGPKGNSNKKK
NTKKFDRRDKQSKGSNQSMRGRTFADHQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatttcggataaaacggttcaaacactggaatctatg
ggattcaaagaacctacacctatccaaaaagacagcatcccttatgcgttaaaaggagac
gacatccttggccaagcccaaacaggtacgggtaaaacaggggcatttggtattccttta
attgagaaagtagtcggccaagaaggcgtacaatctcttatcttagcgcctacaagagaa
cttgcaatgcaagtggctgaacaattaagagagttcagtaaaggacaacgcgtacaagtc
gttacagtatttggtggtatgccaatcgatcgccaaattaaagcgttaaaaagagggcca
caaattgttgtaggtacaccaggccgtgtcattgaccatcttaaccgtcgtactttaaaa
acgcatgatattcatacgttaattttagacgaagcagatgaaatgatgaatatgggattc
atcgatgatatgagatttattatggataaaattcctgctgatcaacgtcaaacaatgcta
ttttcagcaacaatgcctaaagcaattcaagaattagttcaacaatttatgaagacgcct
aaaatcatcaaaacgatgaataatgaaatgtcagatccacaaattgaagagttttatacc
attgttaaagaattagagaaatttgatacatttactaatttcctagatgttcaccaacca
gaattagcaattgtattcggtcgtacaaaacgtcgtgtagatgaattaacaagtgcgtta
ttatctaaaggatataaagcagaaggacttcacggagatatcacacaagctaaacgttta
gaagtcttgaagaaattcaaaaatgaccaaatcgatattttagtagcaactgacgtagca
gcgagaggtctagatatttctggagtaagtcacgtttataactttgatattccacaagat
actgaaagctatacacaccgtattggtcgtacaggccgtgcaggtaaagaaggtattgca
gttacatttgtcaatcctattgaaatggattatattcgccaaatcgaagacgtgaacggt
cgccgtatgaatgcgttaagaccaccacatcgtaaagaagtgcttaaagcacgtgaagac
gatattaaagaaaaagttcaaaattggatgtctaaagataatgaagcgcgccttcaacgt
attgcaagtgaattactagaagaatatgatagcgttgaattagtagcttctttactacaa
gaacttgtcgaagcaaatgatgaagtagaagttcaattaacattcgaaaaaccacttgcc
cgtaaaggtcgtaataataaaggcggctcaagaagaggtaataacaaacgtggtaatggc
aaatttgataataaaaatagacgttcaaaagggccaaaaggcaactcaaataaaaagaaa
aacactaaaaaatttgatcgccgagacaaacaaagtaaaggttctaaccaatcaatgaga
ggtcgcacatttgcagatcatcaaaaataa
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