KEGG   Staphylococcus caprae: DWB96_07865
Entry
DWB96_07865       CDS       T06252                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
scar  Staphylococcus caprae
Pathway
scar02024  Quorum sensing
scar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DWB96_07865 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DWB96_07865 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scar03019]
    DWB96_07865 (hfq)
   03036 Chromosome and associated proteins [BR:scar03036]
    DWB96_07865 (hfq)
Messenger RNA biogenesis [BR:scar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DWB96_07865 (hfq)
Chromosome and associated proteins [BR:scar03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DWB96_07865 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 DUF4809 MBG
Other DBs
NCBI-ProteinID: QDW94133
LinkDB
Position
complement(1646055..1646294)
AA seq 79 aa
MIANENIQDQALENFKAEKTEVTVFFLNGFQMKGVIEDFDKYVVSLVSQGKQHLIYKHAI
STFTVDNESEESAEEKSEE
NT seq 240 nt   +upstreamnt  +downstreamnt
atgattgcaaacgaaaacatccaagatcaagcactagagaactttaaagcagaaaaaact
gaagtcactgtattctttttaaatggctttcaaatgaaaggtgttattgaagactttgac
aaatatgttgtaagtttagtttctcaaggcaaacaacatctgatttacaaacatgcgatc
agcacttttacagttgataatgaatctgaagaatcagctgaagaaaaaagtgaagaataa

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