Staphylococcus caprae: DWB96_09240
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Entry
DWB96_09240 CDS
T06252
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scar
Staphylococcus caprae
Pathway
scar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWB96_09240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scar03019
]
DWB96_09240
Messenger RNA biogenesis [BR:
scar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWB96_09240
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QDW94396
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Position
1919580..1921313
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AA seq
577 aa
AA seq
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MKQLHSNEVGVYALGGLGEVGKNTYAIEYKNEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLIRNKLEEHHLLRTTELH
EIDENSVIKSKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGEPANIAK
MAKIGEEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINNIPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGVECGVDEDNVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNGNKDIQWHQIKSSIIETLQPYLF
EKTARRPMILPVIMKVNEDKGNHKQSNSKNNNKQETK
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaattacattctaatgaagtaggtgtatacgcacttggtggtctaggtgaagtc
ggaaagaatacctatgcaatcgagtacaagaatgaaatcgttatcatcgatgcaggtatt
aaattccctgacgataaccttttaggtatagactatgttattccagattacacttactta
gaacagaatcaagataaaattgttggcctgtttattacacatggccacgaagaccatata
ggcggtgtgcccttcctattaaagcaaattaatgtacctatttacggtggtccattagcg
ttaggtctcatacgtaacaagttagaagaacatcatttacttagaactaccgaacttcat
gaaatagatgaaaatagtgtgattaaatctaaacactttgaaatttcattctatctcact
acacacagtattccagaggcatatggtgtcatcgttgatacccctgaaggtaaaatcgtc
cacactggtgactttaaattcgattttactcctgtgggtgaacctgcgaatatcgctaaa
atggcaaaaattggtgaagaaggcgttctatgtttactttctgattctacaaatgcactt
gtacctgactttacacttagtgaacgtgaagttggacaaaacgtcgataagattttcaga
aattgtaaaggacgtatcatctttgcaacatttgcttctaatatttaccgtgtacaacaa
gctgtagaagctgcgattaaatataatcgtaaaattgttacctttggtcgttcaatggaa
aataatatcaaaattggtatggaactcggttatattaaagcaccacctgaaacatttata
gaaccaaataagattaataacatccctaaacatgaattattaattctttgtacaggttct
caaggtgaaccgatggcagctttatcaagaattgccaacggtacgcataaacaaattaaa
attattcctgaagatacagtcgtatttagttcatctcctattccaggtaatacgaaaagt
attaaccgcactatcaatgctttatataaagcaggtgctgatgtcattcatagtaaaatt
tctaacattcatacatcaggtcacggttctcaaggtgatcaacagttgatgttacgttta
attcaacctaaatacttcttacctatccatggtgagtatcgtatgttgaaagcgcatggt
gaaacgggtgttgaatgtggtgttgatgaagataatgtatttattttcgatatcggagat
gtattagcattaacacatgattctgcacgaaaagctggaagaatcccttcaggaaatgtt
cttgtagatggtagcggcattggcgacataggtaatgttgttattcgagatcgtaaatta
ctttctgaagaaggcttagtaattgttgtcgtaagtattgacttcaataccaataaatta
ttgtctggtccagatatcatttcacgcggatttgtctacatgcgtgagtcagggcaatta
atttatgatgcgcaacgaaaaattaaaacagatgttatttctaagctgaatggtaataaa
gatattcaatggcaccaaattaagtcgtctattattgaaacacttcaaccttatctattt
gaaaagactgctcgtagaccaatgattttaccagtcattatgaaagttaatgaagataaa
ggtaatcataagcaatcaaatagtaaaaataataataaacaagaaactaagtaa
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