Saccharolobus caldissimus: SACC_02240
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Entry
SACC_02240 CDS
T07710
Name
(GenBank) DEAD/DEAH box helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
scas
Saccharolobus caldissimus
Pathway
scas03022
Basal transcription factors
scas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scas00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SACC_02240
09124 Replication and repair
03420 Nucleotide excision repair
SACC_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scas03021
]
SACC_02240
03036 Chromosome and associated proteins [BR:
scas03036
]
SACC_02240
03400 DNA repair and recombination proteins [BR:
scas03400
]
SACC_02240
Enzymes [BR:
scas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SACC_02240
Transcription machinery [BR:
scas03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SACC_02240
Chromosome and associated proteins [BR:
scas03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
SACC_02240
DNA repair and recombination proteins [BR:
scas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SACC_02240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
HBB
BBS7_hp
PhoH
DUF5063
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
BDB97207
UniProt:
A0AAQ4CN26
LinkDB
All DBs
Position
191213..192862
Genome browser
AA seq
549 aa
AA seq
DB search
MKLREWQQQIADIVVKLLKDNFLVALQAPTGSGKTLFALYTSFKVKDKVIFVVRTHNEFF
PIYRELATYFKDKKYSFLVGKSSACVYSNGDVDSQDIYCGGCDLFNGVNIEIRDPPVSAL
NRLKKEGKSLGYCPYYSLLESIRNSHVILLTYPYLFIPWLRETLDINWEEYVIVVDEAHN
IENISNLEERRLSKRTLELAISQAKSKEAIDIMEKIKNKIGKISSSDEKYILINNITEIS
PSEEEMEILLHEYEEIRKEMIRNKNISRNYIGSIIRFFEILNDERVKIFSYSNSLVAKYI
ISSDFINILNDERLTFMLMSGTMQPLDYLRDVIGIKRKLVYIDVEKITKNKISGSYECLI
SIDVTSAYSLRSERMAARYASYLLKIFYNSKSHILAIFPSYEFMRFISKFLNIKYLMENS
DTDIEEVMEKAKKEEKLLIMGIARGKLSEGIEIVNNGSSMISDVVIVGVPYPPIDDYLKI
RVEEISKRIKKDLSDDLIRIQALIAVKQSIGRAIRGPNDKATVWLLDKRFDSLWWKKELN
CLNARKIKL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattaagggagtggcaacaacaaatagctgatatagtagttaagttgttgaaagat
aattttttagtggcattacaagctcctactggaagcggcaaaacactttttgcattatat
acttcttttaaagttaaagataaagtaatctttgtggtgaggactcataatgaattcttt
cctatatatagagagcttgcaacatattttaaggataagaagtattcctttttagtaggt
aagtcatctgcttgtgtatactctaatggagatgtagattctcaagatatatattgtgga
ggatgcgatttatttaatggcgtaaatatagaaataagggatccaccagtatcagcttta
aataggttaaagaaagagggtaaaagtctaggttattgcccatattattcacttttagag
tcaattaggaactctcatgtaatattgcttacatatccgtatctattcattccgtggctt
agagaaactttagatattaattgggaagaatacgttatagtagtagatgaagcgcacaat
atagaaaatatttctaatttagaggaaaggagattaagtaaaaggactttagaactcgct
atatctcaagctaagtctaaggaagctattgatataatggaaaaaattaagaataaaata
ggaaaaatttcttcttcagatgaaaaatatatacttattaataacattactgaaataagc
ccatctgaagaagaaatggaaattttgcttcatgagtatgaagagataagaaaggaaatg
ataaggaacaaaaatatttctagaaattatataggctctattataagatttttcgagatt
ttaaatgacgagagggttaagatattttcgtattctaactctttagttgcgaaatatatt
atatcttcagattttataaatatacttaatgatgagagattaacctttatgctcatgtct
ggtactatgcaacctttagattatttaagggatgttataggaataaaaaggaaactagtt
tatatagacgtagaaaaaattacaaaaaataagatttctggttcgtatgagtgtttaatt
tcaatagacgttacttcagcttatagcttaagatctgagagaatggcggctagatatgcg
tcttatctactgaaaatattttataattcaaaatctcatatactcgcaatattccctagc
tatgaatttatgagatttatatcaaaatttttaaatataaagtatttaatggaaaatagt
gatactgatattgaggaagtaatggagaaagctaagaaggaagagaaattgctcataatg
ggaattgctagaggcaagctatctgagggtatagaaatagttaataatggtagtagcatg
atttctgatgtagtaattgttggagtaccataccctcccatagatgattatcttaaaata
cgtgttgaggaaatatctaaaagaattaaaaaagatcttagtgatgatttgattagaatt
caagctttaatagcagtaaaacaatcaataggtagggctattagaggtccaaacgataaa
gcgacagtgtggcttcttgataagaggtttgatagtctttggtggaagaaagaacttaat
tgcttaaatgctagaaagattaaactgtga
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