Saccharolobus caldissimus: SACC_04860
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Entry
SACC_04860 CDS
T07710
Name
(GenBank) DEAD/DEAH box helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
scas
Saccharolobus caldissimus
Pathway
scas03022
Basal transcription factors
scas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scas00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SACC_04860
09124 Replication and repair
03420 Nucleotide excision repair
SACC_04860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scas03021
]
SACC_04860
03036 Chromosome and associated proteins [BR:
scas03036
]
SACC_04860
03400 DNA repair and recombination proteins [BR:
scas03400
]
SACC_04860
Enzymes [BR:
scas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SACC_04860
Transcription machinery [BR:
scas03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SACC_04860
Chromosome and associated proteins [BR:
scas03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
SACC_04860
DNA repair and recombination proteins [BR:
scas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SACC_04860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPD_arch
Helicase_C_2
DEAD_2
ResIII
DEAD
nSTAND3
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BDB97469
UniProt:
A0AAQ4CNT8
LinkDB
All DBs
Position
complement(427533..429134)
Genome browser
AA seq
533 aa
AA seq
DB search
MSIMLREWQKEYLNTAIEHLRTERTLLLQAPTGSGKTLFALKASLSVGGTIIYLTRTHNE
FTSVKREADRLGLKVAFLFGKASVCPFAQGNEDPEEIDCKSCKLNGKVKDMGNLSPSQII
AEAKRASEYCPYQSLKAKIGNANIVASSYLYFFLPNLRRSILKEIEDKNIIVIVDEAHNL
LFSDEWFKRRIGRKTLKNALEELDIVRKESRISTDKAKEYLSVLYDFINKLDEGSGCKQL
PLSPQPSKEALDQLVKAMKTYVNLIKGPIKRSSLRSVVNFFSEEGEVYNCNGSLVVVPNK
TWDKISSALRSAKYVILMSGTLPELGITGYRINVNIKMGRAEWYYCNNLTSKAKVRSSEA
PKYAEMLKRIYKLSESNVLAFFPNYEFKNLVKGNIRDIPVLEEDKRGVTHEEILELMRNG
KYLVLLVMRAKESEGVEFRFENKNLFDSVILAGLPYPDITDSIVTNRIKRIAELTRRSEE
EVAKELTLITIKQTIGRAFRDPNDFVRIYLCDSRYKEYFSDLGLTEKEIKLFV
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataatgctcagggaatggcaaaaggaatatcttaacaccgcaatagaacactta
agaacggaaagaactttactactccaagcacctacgggatccgggaaaacccttttcgct
ttgaaggcttccctcagtgtagggggtacaataatctatttaactaggacgcataacgag
tttacatcggtaaagagggaagccgacagactcgggttaaaagtagctttcttattcggt
aaagcctccgtatgtccctttgcccagggtaatgaagaccccgaagagatagactgtaag
agctgtaagttgaacggtaaggttaaggacatgggtaacctttcgccctctcaaattata
gcagaggctaagagggcaagtgagtattgcccctaccagtcattaaaggctaagataggg
aatgcgaatatcgtagcgtcatcatacctttacttctttctacccaatttaaggaggtcg
atattgaaggaaattgaagataagaacattatagtaatagttgatgaagcccacaacttg
ttattttcagatgagtggtttaaaaggaggatagggaggaagactcttaagaacgccctg
gaggagttggatatcgtaaggaaggaaagtaggataagtacggataaggctaaagagtat
ctgagtgtgctttacgacttcattaataaactcgatgagggatctgggtgcaaacagtta
ccgttatcccctcaacccagcaaggaggctttagaccaattggttaaggctatgaagact
tacgttaatctgattaaagggcctattaagaggagtagtttgaggagtgtagtgaacttt
ttcagcgaagagggtgaggtttacaactgtaacggaagtctcgtagtagtccctaataag
acgtgggataagataagttctgctctgaggagtgctaaatacgtaatattaatgagcggg
actttgccggaactgggaataactgggtataggattaatgtgaacataaagatgggtagg
gcggaatggtactattgtaataatttgacatctaaggctaaggttaggagtagtgaagct
cctaaatatgctgaaatgttgaaaagaatctataagttaagtgagtctaacgttttggca
ttcttccctaactatgagttcaagaatctcgttaagggaaatattagggatattccggtt
cttgaggaggataagaggggagttacacatgaggagatcctggagttaatgaggaatggt
aagtatctggtactgctggtgatgagggctaaggaaagcgaaggtgttgaattcagattt
gaaaataagaacttattcgatagtgttatcttggctggattaccttatccggatattaca
gattctattgtaaccaacaggataaagaggatagcagagttgaccaggagaagtgaggaa
gaagtggcaaaggaactaactttgattactataaagcagacaattggcagggcttttcgt
gaccctaacgattttgttaggatttacctttgtgatagccgttataaggagtacttttcg
gatctaggattgacagaaaaagagattaagctttttgtttag
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