Streptomyces castrisilvae: P8A18_10070
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Entry
P8A18_10070 CDS
T10534
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scat Streptomyces castrisilvae
Pathway
scat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8A18_10070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scat03019
]
P8A18_10070
03009 Ribosome biogenesis [BR:
scat03009
]
P8A18_10070
Enzymes [BR:
scat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P8A18_10070
Messenger RNA biogenesis [BR:
scat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P8A18_10070
Ribosome biogenesis [BR:
scat03009
]
Prokaryotic type
rRNA processing factors
P8A18_10070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
TMEM215
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WLQ33773
UniProt:
A0ABY9HGW1
LinkDB
All DBs
Position
complement(2345947..2350164)
Genome browser
AA seq
1405 aa
AA seq
DB search
MPQPNEPGTTGNAEDNNTPGDKLPPRRRRRAASRPAGPPSAGERAASEAPAIPAVDAGVS
ETSTENTAEAETAAPARSRRRAVRKATAPAGAPKAAESAEVVEPVVAEEPAEEPVEEAVA
EPVAEAPRARRRAVRKATAPAGAPKAAEVVEPVAVEEPAEEPVEEAVEEPVAEAPRARRR
AVRKATSPAGAPKAAEPKAAEPAEIVEEAPVVESPEPAAEPVAEAPRGRRRAVRKATSPA
GAPKAAEPVEIVAEAPAAAESAEPAAAEPVAEPAEAPRGRTRRRASAPAGAPQAAAQPAD
EATAPADEVTETAEAAEQAEPVAEAPRGRRRAVRKATAPAGAPQATEERAEVQTGESLPE
EAVEELAAEVAEVEEAAPRGRQRRRATAAAGRPEFTAKTEEPARRSRRATRPAVAVFQAP
VFAEPMFQTPETAAAAAAAAGPASQEEEPEEEITTAEEHTAPAEAAPQGGSRRRRRRRGE
AADAEPVEQVAPAQEQPAEDEHEPAGENDSEHDGEDTDEYGDRPSRRRRRGGRRRRRGES
SEDDAAEQQHQDESAAEHTEDEPEAAQESDDEGDEEQDDHEGAASGSSSSRRRRRRRRRS
GDAGSDAENGTDDPERTVVKVREPRKKEERELGTGFDEVQSIKGSTRMEAKKQRRREGRE
QGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGN
VYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMAHGPRRIETALKSGQSVLVQ
VTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAG
VIVRTAAEGASEDELRRDVERLQQQWEDIRKKSRSTGSSNAPTLLYGEPDMTVRVVRDIF
NEDFSKVIVSGDEAWETIYGYVSHVAPDLTDRLSRWTSEVDIFATYRIDEQLMKALDRKV
YLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGI
VVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSE
TCVHCNGRGVIVHMEQPASVGGGGGGKRSKKRRGGSGQDHEHDHGHEHVSDTEAETEAEV
AAEAAAPVALPEPEFVADEELYSSPAEAEAAARGRGRRRASRKASAPAGAPKSASAPAEE
TVAEPVAEPEPVKAPEPVAETPAEAPAEAPQGRTRRRATRKATAPAGSPAPAEAVVSEPV
MAEPAEPAPAAEEPASGPDPVASEDPVVEAAHEEVPADEPAAPPRVRRRATRKVSAPAGP
PAGAEEAAVVVVEAPEAEAEAEPAPAKKAARKTAKKATAKKAAVKKTAAKKTAAKKTTAK
KAAAKKTVAAEQQTASPVTATADEA
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgccccagccgaacgaacccggcaccaccgggaacgcagaagacaacaacacccccggg
gacaagctgccgccgcgccgcaggcgccgcgccgcctcccgccccgcgggcccgccgtcg
gcgggcgagcgggcggcctccgaggcgccggccataccggccgttgacgccggagtgtcc
gagaccagcaccgagaacaccgccgaggccgagaccgccgccccggcccgctcccgccgc
cgcgcggttcgtaaggcgactgccccggccggtgcgccgaaggccgccgagtccgctgag
gtcgtggagccggtcgtagcggaggagcctgccgaggagccggtggaggaggccgtggct
gagcccgtcgccgaggcgccgcgtgcccgccgccgtgccgtccgtaaggcgactgccccg
gccggtgcacccaaggccgctgaggtcgtggagccggtcgcggtcgaggagcctgccgag
gagccggtggaagaggccgtggaggagcccgtcgccgaggcgccgcgtgcccgccgccgt
gccgtccgcaaggcaacgtccccggccggtgcgcccaaggccgccgagcccaaggccgcc
gagccggccgagatcgtcgaggaggcccccgtggtggagagccccgagcccgcagcagag
cccgtcgccgaggcgccgcgcggccgtcgccgtgccgtccgcaaggcaacgtccccggcc
ggtgcgcccaaggccgccgagcccgtcgagatcgtcgcggaggcgccggccgccgccgag
agcgcggagcccgccgccgcggaaccggtcgccgagcccgccgaggccccgcgcggccgc
acccgccgccgggcatccgccccggccggcgccccgcaggccgccgcccagcccgccgac
gaggccaccgcgcccgccgacgaggtcaccgaaacggccgaggccgccgagcaggccgag
cccgtcgccgaggcgccgcgcggccgtcgccgtgccgtccgtaaggccaccgccccggcc
ggcgccccgcaggccaccgaggagcgcgccgaggtccagaccggcgagagcctgcccgag
gaggccgtcgaggagctggccgccgaggtcgccgaggtcgaggaggccgccccgcgcggc
cgtcagcgccgccgcgccaccgccgccgcgggccgccccgagttcaccgccaagacggag
gagcccgcgcgccgcagccgccgggcgacgcgcccggccgtggccgtcttccaggcgccg
gtcttcgccgagccgatgttccagaccccggagaccgcggccgccgccgctgccgccgcg
ggccccgcctcgcaggaggaggagcccgaggaggagatcaccacggccgaggagcacacc
gcccccgccgaggccgccccgcagggcggatcgcgccgccgtcgccgccgtcgcggtgag
gccgccgacgccgagcccgtcgagcaggtggccccggcccaggagcagcccgccgaggac
gagcacgaacccgcgggcgagaacgactccgagcacgacggcgaggacaccgacgagtac
ggtgaccggccgtcgcgccgccgccgtcggggtggccgccgccgccgtcgcggcgagtcc
tccgaggacgacgccgccgagcagcagcaccaggacgagtccgccgccgagcacaccgag
gacgagcccgaggccgcccaggagtccgacgacgagggcgacgaggagcaggacgaccac
gagggcgccgcctccgggtcgagcagcagccgccgtcgcaggcgccgccgtcgtcgcagc
ggtgacgccgggtccgacgcggagaacggcacggacgaccccgagcgcacggtcgtcaag
gtccgcgagccccgcaagaaggaggagcgggagctcggcaccggcttcgacgaggtccag
tccatcaagggctcgacccgcatggaggccaagaagcagcgccgccgcgagggccgcgag
cagggccgccgccgggtgccgatcatcaccgaggccgagttcctggcccgccgcgaggcc
gtcgagcgcgtcatggtcgtccgccagagcggcgagcgcacccagatcggcgtccttgag
gacaacgtgctcgtggagcactacgtcaacaaggagcaggccaccagctacgtcggcaac
gtctacctgggcaaggtccagaacgtgctgccgtccatggaggccgccttcgtcgacatc
ggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctcggcatg
gcccacgggccgcgccgcatcgagaccgcgctcaagtccggccagtccgtcctcgtccag
gtgacgaaggacccgatcggccacaagggcgcccgcctgaccagccaggtctcgctgccc
ggccgctacctggtctacgtgcccgagggctcgatgacggggatcagccgcaagctgccc
gacaccgagcgcgcccggctcaagaccatcctcaagaagatcgtccccgaggacgcgggc
gtcatcgtccgcaccgccgccgagggcgcgagcgaggacgagctgcgccgtgacgtcgag
cggctccagcagcagtgggaggacatccggaagaagtccaggagcaccggcagctccaac
gcgccgacgctcctgtacggcgagccggacatgaccgtccgggtcgtccgcgacatcttc
aacgaggacttctccaaggtcatcgtcagcggcgacgaggcgtgggagaccatttacggc
tacgtctcgcacgtggcgcccgacctgacggaccggctgtcgcggtggacctccgaggtc
gacatcttcgcgacgtaccggatcgacgagcagctcatgaaggcactggaccgcaaggtc
tacctgccgagcggcggctcgctggtgatcgacaagaccgaggcgatggtcgtcgtcgac
gtcaacaccggcaagttcaccggccagggcggcaacctggaagagaccgtcaccaagaac
aacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatc
gtcgtcgtcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgc
ctgctggagtgcctgggccgcgaccgtacgaagcaccaggtcgccgaggtcacctcgctg
ggcctggtccagatgacccgcaagcgggtcggccagggtctgctggagtccttctccgag
acctgcgtccactgcaacgggcgcggcgtgatcgtgcacatggagcagcccgcgtcggtg
ggcggcggtggcggcggcaagcgctcgaagaagcgccgcggcgggtccggccaggaccac
gagcacgaccacggccacgagcacgtctccgacaccgaggccgagaccgaggccgaggtg
gcggcggaggccgccgccccggtggcgctgcccgagccggagttcgtcgcggacgaggag
ctgtacagcagccccgccgaggccgaggccgctgcgcgcggccgtggccgccgccgggcg
tcccgcaaggcgtccgccccggcgggcgccccgaagtccgcgtccgccccggccgaggag
accgtggccgagccggtcgcggagccggagcccgtcaaggccccggagccggtggccgag
acgcccgccgaggcacctgccgaggcgccccagggccgtacgcgccgccgggcgacccgt
aaggcgaccgcccccgcgggctcgcccgccccggccgaagcggtcgtgtccgagccggtc
atggcggagcccgccgagcccgctccggccgccgaggagccggcgtccgggcccgacccg
gtcgcctccgaggacccggtggtcgaggccgcgcacgaggaggtcccggccgatgagccg
gccgcgccgccgcgtgtccggcgccgcgccacccgtaaggtcagcgcgcccgccggtccc
cccgcgggggccgaggaggccgcggtcgtcgtggtggaggcccccgaggcggaggccgag
gccgagccggcaccggccaagaaggcggcccgcaagaccgccaagaaggccacggccaag
aaggcggccgtcaagaagaccgcggccaagaagaccgcggcgaagaagacgacggccaag
aaggcggcggcgaagaagacggtggcggcggagcagcagaccgcgtcgcccgtcacggcc
acggccgacgaggcctga
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