Streptomyces castrisilvae: P8A18_17860
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Entry
P8A18_17860 CDS
T10534
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scat Streptomyces castrisilvae
Brite
KEGG Orthology (KO) [BR:
scat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scat03019
]
P8A18_17860 (hrpA)
Enzymes [BR:
scat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
P8A18_17860 (hrpA)
Messenger RNA biogenesis [BR:
scat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
P8A18_17860 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
nSTAND_NTPase5
PhoH
SLFN-g3_helicase
DUF6139
NTPase_1
ResIII
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
WLQ35181
UniProt:
A0ABY9HKV0
LinkDB
All DBs
Position
complement(4158910..4162854)
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTSFADLQSQLARLSLRDAHRLGRRLEGARRIRKPEAQQAVLDEIAAQAGKAAGRLTQR
AARMPGISYPEQLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIADELDTPLGETVGWKVRFTDQVNQDSTFVKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVVTSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEGDAEDTDDADRDQITAICDAVDELQSEGPGDVLVFLSG
EREIRDTADALGKRNLRHTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICVRLYSEDDFLT
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALEQEE
KSPREGKKGQRLTPLGRKLSQLPVDPRLARMVIEADRNGCVREVMVIAAALSIQDPRERP
SEKQTQADQQHARFKDETSDFLAFLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREW
QDIYAQLRTVAKQMGIEINEDDAPEQSVHTSLLAGLLSHIGLKDTEKNEYLGARSAKFAI
FPGSALFKKQPRFVMSAELVETSRLWARVNARVEPEWIEPLAQHLLKRTYSEPHWEKDQA
AVMAYERVTLYGVPIVAQRKINFGRIDQETSRDLFIRNALVEGDWRTHHQFFHDNRKLLG
EVEELEHRARRRDILVDDETLFDFYDQRVPEHVVSGAHFDSWWKHKRRDEPDALDFERSM
LINEKAGAVTKDDYPDSWRQGKLKFRVTYQFEPGADADGVTVHIPLQVLNQVTSEGFDWQ
IPGLREEVVTELIRSLPKPIRRHYVPAPNYADKFLDRAVPLQEPLPVTLARELQRMVGVP
VTADDFDLGRVPDHLKITFRIVDERRRKVAEDKDLEALRVQLRPKARQALSKAAAATAGP
TGESIERSGLTDWTIGTLDKVFETRRAGQPVKAYPALVDQGATVAVRLFDTEAEQQQAMW
RGTRKLILLNIPVNPAKFASDKLTNQQKLALSRNPHGSIQALFDDCATAAADRLIAAYGG
PAWDQASFRKLYDKVRADLVDLTVRTIGQVQQILAAWQACERRLKTTNSLVLINNVTDVR
DHLARLMPPGFVTATGLRRLPDLMRYLVAEDRRLQQMPANAQRDTTRMEKVHEMQDEYAW
LLEQLPKGRPVPQEVLDIRWMIEELRVSYFAHALGTAFPVSDKRIVKAIDAAAP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgatctccagtcccagctcgcgcggctctcgctccgcgacgcg
caccggctcggccgccgcctcgaaggcgcccgccgcatccgcaagcccgaggcccagcag
gccgtgctggacgagatcgccgcccaggccggcaaggccgccgggcggctcactcagcgg
gccgcgcggatgcccggcatctcgtacccggaacagctcccggtcagccagaagaaggac
gagatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgcgggtgagaccggctcc
ggcaagaccacccagatccccaagatctgcatggagctgggccgtggcgtccgcggcatg
atcgggcacacccagccgcgcaggatcgccgcgcgcacggtggccgagcggatcgccgac
gagctggacacgccgctgggcgagacggtcggctggaaggtccgcttcaccgaccaggtg
aaccaggactcgaccttcgtcaagctgatgacggacggcatcctgctcgcggagatccag
acggaccgcgagctgctggcgtacgacacgatcatcatcgacgaggcccacgagcggtcg
ctgaacatcgacttcctgctcggctatctggcccggctgctgcccaagcgccccgatctg
aaggtcgtcgtcacctccgcgaccatcgacccggagcgcttctcgcgccacttcggcgac
gcgccgatcgtcgaggtcagcgggcgtacgtatccggtggaggtccgctaccggccgctg
ctggagggggacgccgaagacacggacgacgccgaccgggaccagatcaccgcgatctgc
gacgccgtggacgagctccagtccgaggggcccggcgacgtcctggtcttcctctccggc
gagcgcgagatccgcgacacggcggacgcgctcggcaaacgcaacctcagacataccgag
gtactccccctctacgcgcgcctgtcgcacgccgagcagcaccgggtgttccagcgccac
acgggacgcaggatcgttctggcgaccaacgtcgccgagacctcgctgaccgtccccggc
atcaagtacgtgatcgacccgggcaccgcccgtatctcccgctacagccaccgcaccaag
gtccagcggctgccgatcgaacggatctcgcaggccagcgccaaccagcgcaagggccgc
tgcggccgtacgtcggacggcatctgcgtccggctgtactccgaggacgacttcctgacc
cgcccggagttcacggacgcggagatcctgcggacgaacctggcctccgtcatcctccag
atgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggaccac
cgcaacatccgcgacggcgtgcagctgctccaggagctgggcgcgctggagcaggaggag
aagtccccccgggaggggaagaaggggcagcggctcaccccgctggggcgcaagctctcg
cagcttccggtggacccgcgtctggcccgcatggtcatcgaggcggaccgcaacggctgt
gtccgcgaggtcatggtcatcgccgccgcgctctccatccaggacccgcgcgagcggccc
tccgagaagcagacgcaggccgatcagcagcacgcccggttcaaggacgagacgtccgac
ttcctggcgttcctgaatctgtggcgctacatccgtgagcagcagaaggagcgcggctcc
tccagcttccgccggatgtgcaaacaggagtacctgaacttcctgcgcatccgcgaatgg
caggacatctacgcgcagctgcgcacggtcgccaagcagatggggatcgagatcaatgag
gacgatgctcccgagcagtcggtgcacacctcgctgctcgccggtctgctgtcgcacatc
gggctgaaggacaccgagaagaacgagtacctgggcgcgcgcagcgccaagttcgcgatc
ttccccggttcggcgctgttcaagaagcagccgcggttcgtgatgtcggccgagctggtc
gagacgtcccggctgtgggcgcgggtcaacgcccgggtcgagccggagtggatcgagccg
ctggcccagcacctgctgaagcgcacctacagcgagccgcactgggagaaggaccaggcg
gcggtgatggcgtacgagcgggtcacgctgtacggcgtaccgatcgtcgcccagcgcaag
atcaatttcggccgtatcgaccaggagacctcgcgggacctcttcatccgcaacgccctg
gtcgagggcgactggcgcacgcaccaccagttcttccacgacaaccgcaagctgctcggc
gaggtcgaggagctggagcaccgggcccggcgccgcgacatcctcgtggacgacgaaacg
ctgttcgacttctacgaccagcgcgtcccggagcacgtcgtctccggtgcgcacttcgac
tcgtggtggaagcacaagcgccgggacgagccggacgcgctcgacttcgagcgctcgatg
ctcatcaacgagaaggccggggccgtcaccaaggacgactacccggactcctggcggcag
gggaagctcaagttccgggtgacctaccagttcgagccgggcgcggacgccgacggggtg
accgtccacattccgctccaggtgctcaaccaggtcacgtccgagggcttcgactggcag
atcccgggcctgcgcgaggaggtcgtcaccgagctgatccgctcgctgccgaagccgatc
cgccggcactacgtgcccgcgccgaactacgcggacaagttcctcgaccgggccgtaccg
ctccaggaaccgctgccggtgacgctcgcccgtgagctccagcggatggtcggggtcccg
gtcacggcggacgacttcgacctgggccgggtcccggaccacctcaagatcaccttccgg
atcgtcgacgagcggcgccgcaaggtcgccgaggacaaggacctggaggcgctgcgcgta
cagctgcgtccgaaggcccgccaggcgctgtccaaggccgccgcggcgacggccgggccg
accggtgagtccatcgagcgctccggcctcacggactggacgatcggcacgctggacaag
gtcttcgaaacgcggagggccggccagccggtcaaggcgtacccggccctggtcgaccag
ggcgcgaccgtcgccgtacgcctcttcgacaccgaggccgagcagcagcaggcgatgtgg
cgcggtacccggaagctgatcctgctgaacatcccggtcaatccggccaagttcgcgtcg
gacaagctgacgaaccagcagaagctggccctgtcccgcaacccgcacggctccatccag
gcgctcttcgacgactgcgcgacggcggccgccgaccggctgatcgcggcgtacggcggc
cccgcctgggaccaggcgtcgttccggaagctgtacgacaaggtgcgcgcggacctggtg
gacctgaccgtccgcacgatcggccaggtgcagcagatcctggcggcctggcaggcgtgc
gagcgccggctgaagaccaccaacagcctggtgctgatcaacaacgtcacggacgtacgc
gatcacctggcgcgcctgatgccgcccggcttcgtcaccgcgaccgggctgcgcaggctg
cccgacctgatgcgctacctggtcgccgaggaccgcaggctccagcagatgccggccaac
gcccagcgcgacaccacgcgcatggagaaggtccacgagatgcaggacgagtacgcctgg
ctgctggagcagctgccgaagggcaggcccgtcccgcaggaggtgctggacatccgctgg
atgatcgaggagctgcgggtgagctacttcgcgcacgccctgggcaccgcgttccccgtc
tcggacaagcggatcgtcaaggcgatcgacgcggcggcgccgtag
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