KEGG   Scyliorhinus canicula (smaller spotted catshark): 119950750
Entry
119950750         CDS       T11175                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    119950750 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scau03400]
    119950750 (tdp1)
DNA repair and recombination proteins [BR:scau03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     119950750 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho AGH DUF8404 DUF1580
Other DBs
NCBI-GeneID: 119950750
NCBI-ProteinID: XP_038629393
LinkDB
Position
2:complement(9538369..9671506)
AA seq 671 aa
MIVFFPAERGTQREEAMSGGVSKVQSQHGRWTVSSSDEEDAEPTRRADRPCPLPQPARKD
WVSDSDETVVDEGEFEAVSSGHANAVSTTDRPSGPDHSRKCSPSPRASGAGKMMEKCATN
PVKTETSDLSRQPSPALKRLRPSSESGWGVSSSEEEPDDKAEVRLVKVEPADQGGPAPRP
KKQRLEGTDYRCPSVSSVTTWPSKSERAGDTLDTWDVLEKAKRFSFYLTKVSGIPSKDNC
GALHIKDILSPLFGTIKASAQFNYCIDIPWLVKQYPEEFRTKPLLVVHGEQRQSKAELHE
DAHPYTNIRLCQAKLEIAYGTHHTKMMLLLYEEGFRVVIHTSNLIRDDWHQKTQGIWLSP
LYPRLPEGSSETAGESVTNFKRDLIDYLTSYRSAGLSEWIAHIKQHDLSETRVYLIGSTP
GRHQGNEKQKWGHFKLRRILSDCTSPVTNQESWPLIGQFSSIGSLGADETKWLCSEFKES
LATLGKSQRCLSSQQVPLHLVYPTVENVRTSLEGYPAGGSLPYAIVTAQKQPWLPSFFCR
WSAEGSGRSRAMPHIKTYMRASPDFGELAWFAVTSANLSKAAWGALEKNGLQLMIRSYEL
GVLFLPTAFGIATGRFSVHRGRLPDCKVSETSFPIPYDLPPQHYSSKDRPWIWNIPYLHA
PDTNGNVWAPS
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgattgttttctttccggcagagagagggacacagagagaagaagccatgtccggagga
gtgagcaaagttcagagtcagcacgggagatggacagtgtcgagcagcgatgaggaagac
gctgaacctactcgaagggcagacagaccgtgcccacttccacagcctgccaggaaagac
tgggtgtccgattcggacgagactgtggtcgatgaaggagagtttgaggctgtgagctct
ggccatgcgaatgctgtttccaccactgatcgaccttcaggacccgatcattccaggaaa
tgttcaccgagccctcgtgcatccggggctgggaagatgatggagaaatgtgccacaaac
cctgtcaaaactgaaacgtctgacctcagcaggcagccctcccctgctcttaagaggtta
agaccgtcatccgaatcgggctggggggtctccagcagcgaggaggagcctgacgacaag
gctgaagtgcggctggtcaaggtggagccggctgaccaggggggcccagctccgaggccg
aagaaacagcggctggaagggacggactatcgctgtccctcggtgagctcagtaactacc
tggccatccaaatcggagagggctggtgacaccttagacacgtgggacgtgctggaaaag
gccaagcgcttcagtttttacctgaccaaagtctctggaatcccaagcaaagacaactgc
ggagcacttcacataaaagatattttatctcctctctttgggacaatcaaagcttcagct
cagttcaattactgcattgatattccttggttggtgaagcaatacccggaagaattcagg
acaaagcctttattggttgttcatggtgagcagcgtcagtctaaagcagaactgcacgaa
gatgcacatccgtataccaacatccgcctctgccaggccaagttggagattgcctacgga
acacatcacacgaagatgatgctacttttgtacgaagaaggtttccgagttgtgatccac
acgtccaacttgatccgcgatgactggcatcaaaagacgcaagggatatggctaagccct
ctgtacccaaggttaccagaagggagttctgaaacagcgggcgaatcggtgacgaacttc
aagcgcgacttgattgattacctcacgtcttaccgctcggctggactcagtgaatggatt
gctcacataaagcagcacgatttatcagaaaccagggtttatctcattggctccactccc
ggccgtcaccaagggaacgaaaagcaaaaatggggtcactttaaactcagaaggatcttg
agtgactgcacctcacctgtgacgaatcaggaatcgtggcctcttattggccaattttcc
agcattggctccttaggagctgacgaaaccaaatggctgtgctcggaatttaaggagagc
ctcgcgacactaggcaaaagtcagaggtgcttgagtagccaacaggtgcctcttcatttg
gtttatccaactgttgagaatgtcagaacaagtttagaaggatacccggccgggggctca
ctaccgtacgccattgttactgcacagaaacaaccgtggctgccctcgttcttctgtcga
tggtctgctgaaggctcaggccggagccgggccatgccccacatcaagacgtacatgagg
gcttcaccagacttcggagagctcgcgtggttcgcagtcacaagtgccaatctgtcaaag
gctgcctggggagccctagagaaaaatggccttcaactgatgatccgctcgtatgaactg
ggagttctgttcctgcccaccgcctttgggatagccaccggccgattctcagtgcatcga
ggtcgattgccagattgcaaggtgtcagagacgtcgttccccatcccatatgacctgcct
ccacagcactatagcagcaaagatcgaccatggatctggaacattccgtaccttcatgcc
cctgacaccaatggaaatgtttgggccccctcctaa

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