Scyliorhinus canicula (smaller spotted catshark): 119950892
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Entry
119950892 CDS
T11175
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04120
Ubiquitin mediated proteolysis
scau04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119950892 (ube4b)
04120 Ubiquitin mediated proteolysis
119950892 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scau04121
]
119950892 (ube4b)
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119950892 (ube4b)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
U-box type E3
119950892 (ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
119950892
NCBI-ProteinID:
XP_038629725
LinkDB
All DBs
Position
16:138268566..138355906
Genome browser
AA seq
1399 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGLTSQPTTPLTSPQRENPPGVSAATPGISQNMALSVQSVTP
ATSPIGATGVAHRSQSSEGVSSLSSSPSNSLENQSQSLSRSQSMDIDSVSCEKSMSQVDV
DSGIENMEVDEGDRREKRSLTDKEPSLGSDVSEEQALSVICKIFRVSWKERDRDVIFLPG
LAAEFKQNVKEGSTVIQFPNISSPASAGLGPTLEAIDYTMTNEFYFRQHVFSDWKDLIGQ
ILMEVLMLSTQMPEDNPFASLTATSQPIAAAARSPDRNLPLNPSSHGTSPMFCSPGSFGA
SSLSSLYGSSPSSRSFSARNPSKTAGIENQQPKLASPISLTPSSPCQSTMATSSSSTQAS
SSSTQASSSGQPSLTTSCPPLFSTSPRLRNVGTNPLPITPVSSSPQTMTSSPSSIPMSSP
RQRPSVMGPPLFPVISSAAASRSSPLNQLPPSIYNNPFSLLLFALSDLPEDSSDDDDDDD
EEEDDVDLSSVQFGSSLGTLGACAESGSDRFTIEACKETEMLNYLIECFDRVGIEERKAP
KMCSQPSVSQLLSNIRSQCISHTALVLQGALTQPRSLLQQSLLVPYMLCRNLPYGFIQEL
VRMTHQDTEVFKQIFIPIVQGLALAVKECSLDGDSFKYPLVALQELCEIKFGKTHPVCTL
VISLPLFLPDPLSQGTGRELQRLSVLGSFFSLSVFAEDDTRVVEKYFSGPTLTLENTRVV
SQSLQHHLESARTDLFKVLHNILLNGETRESALNYMAAVVNRNMKKAQMQTDDRLVSTDG
FMLNFLWVLQQLSTKIKLETVDPMYIFHPKCRINIPADETRVKASMEDIKCWLSELNDQS
RFAEPKFPTECFFLTLHAHHLAILPSCRRYIRRLRAIRDLNRTVEELKNSESQWKDSPLA
SRHREMLKRCKTQLKKLVRSKACADAGLLDENLLRRCLQFYGTLIQLIFRLVDPRYPDMT
LPLNPEIPKVFAALPEFYVEDIAEFLLFIVQYSPQVLYEPCTQDVVTFLVVFICSQNYIR
NPYLIAKLVEVMFVTNPSVQPRTQKFYEIMENHPLATKQLVPALMKFYTDVEHTGATSEF
YDKFTIRYHISTIFKSLWQNVAHQGTFMEEFNSGKQFVRYINMLINDTTYLLDESLDSLK
RIHEVQEEMKNKERWDSLPRDQQQSRQSQLTQDERVSRSYLALGAETVDMFHYLTKQVQK
PFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLHLDCPR
FAKAIADDQRSYSKELFDEVISKMRKAGIKSTIAIEKFRLLAEKVEEIVTKNARAEIDYG
DAPDEFRDPLMDTLMNDPVKLPSGTIMDRSIILRHLLNSPTDPFNRQHLTENMLEPVPEL
KEKIHAWMKEKQHANRSSQ
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacttagtgctgatgagattcgtagacgacgccttgcacggcttgctggtgga
ctgacttcacaacccaccaccccgcttacctccccgcagcgagaaaacccaccgggagta
tctgcagcgacgcctggcatatctcaaaatatggccctaagtgtacagagcgtaactcct
gctacatctcctattggagcaacaggtgttgcacatagaagccagagcagtgaaggagtg
agttcactcagcagttcgccatcaaatagccttgaaaaccagtcccaaagtctgtccaga
tctcagagtatggatatcgatagtgtgtcctgtgagaaaagcatgtcccaagtggatgta
gactcaggaattgaaaatatggaagtcgatgagggcgatcgtcgggaaaaaagaagtctg
acggataaggaaccctcgttggggtcagatgtgtcggaagaacaagcactttcggttata
tgtaaaatcttccgggtctcctggaaggaacgtgatcgggatgtgattttcttacctggc
ctggctgcagagtttaaacagaatgtgaaagaaggttcaacagttatacagtttccaaac
atcagtagccctgcctcagctggacttggtccaacccttgaagctatagattataccatg
accaatgaattttactttaggcagcatgttttctcggactggaaagatttgattggccag
attctaatggaggttctgatgctgtccactcaaatgccagaagacaacccatttgccagt
ttgaccgccacctctcaacctatcgcagcagctgcaaggtcacctgacaggaatttgccc
ctaaacccgtcaagtcatggaacaagtcctatgttttgcagcccgggttcttttggtgcc
agttctttatcgagtctgtatggaagcagtccaagttctcgatccttctcggccagaaac
ccttccaagactgctggcattgagaaccagcagcctaagttggcaagccctatttcattg
acgcccagttctccatgccaaagcactatggcaactagttcatcctcaacacaggccagt
tcatcctcaacacaggccagttcttcaggacaaccatcattgaccacaagctgcccaccc
ttattctccacttctcccaggctaagaaatgttggtacaaatccattgcctattacacct
gtctcttctagcccacaaaccatgaccagcagcccttcatcaatcccgatgagttctcca
agacaacgaccttctgtaatgggcccaccattatttccagtcatttcttctgcagcagcc
tcccgttcctctccactgaaccagctaccacctagtatctacaacaaccctttttccctt
ctcctcttcgctctttctgatttaccggaggacagcagtgatgatgatgatgacgatgat
gaggaggaagatgatgttgatttgtctagtgtgcagtttggttccagtttgggcacactt
ggtgcttgcgcagagtctggcagtgatcgttttacaatcgaagcatgtaaggagacggag
atgttgaactacctcatagagtgctttgacagagttggaatagaagagaggaaagctcca
aagatgtgcagtcaaccatctgttagtcagctgctgagcaacatccgatcccagtgtatc
tcccatacagctcttgtattgcagggagccctcacacagccaaggtccttattgcagcaa
tcattgctagtaccgtatatgttgtgtcgaaatcttccttatggcttcattcaagagcta
gttagaatgactcaccaggacaccgaggtattcaaacagatctttattccaattgtgcaa
ggtttagcactggctgtgaaagaatgctctttggatggtgatagcttcaagtatccactt
gtggcattgcaagaattgtgtgaaattaagtttgggaagacgcatcctgtgtgtactttg
gtgatctcgcttcccttgtttttgcctgatcctttaagtcaaggcaccggcagagagttg
caaagactttcagtcttgggctctttcttcagtctttctgtgtttgcagaagatgataca
agagttgtcgagaaatatttctctggacctacgctaacacttgaaaatacgagagttgtc
agtcaatccttgcaacaccatctggaatcagccaggactgatctcttcaaagttttgcac
aatattttactgaacggcgagaccagagagtctgctttaaattacatggcagcagtggta
aaccgtaacatgaagaaagcacaaatgcaaacagatgaccgactggtttcaacagatggg
ttcatgttgaattttctgtgggtgctgcagcaactgagcaccaagatcaagctagaaacg
gtcgacccaatgtacattttccaccccaaatgtcgcatcaacatacccgctgatgagacc
cgtgtgaaagcctctatggaggacattaaatgctggctgtctgagctcaatgatcagtcc
aggttcgcagagccaaagttccccacagaatgctttttcctgacgttacatgcacatcac
cttgccatcttgccaagttgccgccggtacataagaagacttcgagctattcgagatcta
aacaggactgttgaggagctgaaaaacagtgaaagtcagtggaaggattccccattggca
agcagacatcgggagatgttaaaacgatgcaaaacccaattgaagaaattggtgcggagc
aaggcctgtgccgatgctggtttactagatgagaatctgttaaggagatgcctccagttt
tatggcacattaattcaattgatctttcgtctggttgatccacgctacccagacatgaca
ttgccccttaacccagagatccccaaggtgtttgcagcattgcctgaattctatgtagaa
gatattgctgaatttttgctgtttattgtacaatattcccctcaggttttatatgagcct
tgtactcaggacgttgtcaccttcctagttgtatttatctgtagtcagaactatatccga
aatccttacttgattgccaagctggtagaagtcatgtttgtgacaaatccatcagtccag
cctcgaacacagaaattctatgaaataatggagaaccatccactggccactaaacaactg
gtgcctgcattaatgaaattttacacagatgtcgaacatactggagcaacaagtgaattc
tatgacaaatttactatccgttaccacatcagcacaatctttaagagcctttggcagaac
gtggcacatcaaggcaccttcatggaagagtttaactcgggaaagcaatttgtccgttac
atcaatatgttaataaatgacacaacatacctgttggatgaaagtctggattctctcaaa
cgcatccatgaggtacaagaagaaatgaagaacaaagagcggtgggactcattgcccagg
gatcagcagcagagtcgacaatcacagctgacccaggatgagcgtgtctccagatcgtac
cttgcccttggtgctgaaacagtggacatgttccattacctcaccaaacaagtgcaaaaa
cctttccttagacctgaactcggcccccgtttggctgccatgttaaacttcaacttgcag
caactgtgtgggccgaagtgccgggacctgaaggtagaaaacccagaaaaatacggcttc
gaaccaaagaaacttttggatcagctgactgacatttacctgcatttagactgtccccgg
tttgcaaaggccattgcggatgaccagcgatcgtacagtaaagaattatttgatgaagtc
atttcaaagatgcgaaaagcaggaattaaatcaacgatagctattgaaaaatttagactt
ctggcagaaaaggtggaagaaattgtcacaaagaacgcccgtgcagaaattgactatggg
gatgcaccagatgaattccgagatccactgatggacacactgatgaatgatcctgtgaag
ctgccctctgggaccataatggaccgctctattattttgagacatttattgaattcacca
acagatccatttaaccgccagcatctgacagagaatatgctggagccagtgcccgaactg
aaggaaaaaatccatgcctggatgaaagagaagcaacatgcaaatcgttcttcacagtga
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integrated database retrieval system
