Scyliorhinus canicula (smaller spotted catshark): 119950963
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Entry
119950963 CDS
T11175
Name
(RefSeq) interferon-induced protein with tetratricopeptide repeats 5-like
KO
K24850
interferon-induced protein with tetratricopeptide repeats 5
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scau03016
]
119950963
Transfer RNA biogenesis [BR:
scau03016
]
Eukaryotic type
tRNA degradation factors
Other tRNA degradation factors
119950963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_14
TPR_19
TPR_11
TPR_1
TPR_CcmH_CycH
TPR_8
TPR_10
TPR_16
ANAPC3
NatA_aux_su
TPR_15
ARM_TT21_5th
TPR_9
TPR-S
ARM_TT21
TPR_MalT
ARM_TT21_N
NSF
Rapsyn_N
Tlp
MIT
Motif
Other DBs
NCBI-GeneID:
119950963
NCBI-ProteinID:
XP_038629921
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All DBs
Position
16:59999633..60007786
Genome browser
AA seq
466 aa
AA seq
DB search
MSIIQKNLLKVKLNQLQCHFTWIPQKDNIDLDGMKQTLQDSVKFDEKYQATSYNQLAFVN
CLQENCEEAIQNLKEAERILRDNHEDEFDKRIIVTYGNYAWVYFRMGKLTEAQSYLDKLE
RICQQFPGASGYTAMIPEVYGEKGWSLLSSAAKCYEEAVECFQRALEEDTDNVEWNFGFA
TALMRLEEHSGKPENGKFSELVMQLKRVLELDPGHTVAMVLLALKLQDLNENEKALRLVE
QALQKTPDQLYMIRYAAKFYRRAGEVGKALELLEKGLKIIPNSAFFHHQIGLCYKIKLIQ
LIKSDSKSSRNFKLQRKVTLINQCKHHFDEAFRLKPSLIMAKLAFAEICTIDKDHDKAEA
IYKNLLNLEYITLENKQEIYLEAGKFEFYHKKSELNASKCYLEGFKIKHASKARERCRYY
LEKTAENRLCENRRDIQAFCIRGIIHMVDGQECFEKVLEIERSNEE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcatacagaagaacttgttgaaagtgaagctcaatcagcttcaatgccacttc
acgtggattccacagaaagataacattgatctggacggtatgaagcaaactttacaagat
tcagtgaagtttgatgagaaatatcaagccacctcttacaaccaactcgcttttgtaaac
tgtctgcaagaaaactgtgaggaggcgattcaaaacttaaaggaagctgaaagaattctg
agggacaatcatgaagatgagtttgataaaagaatcatcgtcacctatggaaactatgcc
tgggtatattttcgcatggggaaactgacagaggctcagtcctacctcgacaaactggag
aggatctgtcaacaatttcctggtgcctctgggtacacagcaatgatacctgaagtatac
ggggagaagggttggtcactgctgagttctgcagctaaatgctatgaagaggcagtggaa
tgttttcaaagggccctggaagaagatacggataacgttgaatggaactttggctttgca
actgccctgatgcgtctggaagagcattctgggaagccagagaatgggaaattcagtgaa
ttagtgatgcagttgaaacgtgttctggagcttgatccaggtcacactgtagccatggtt
ctgctggctttaaaactgcaagacctcaatgaaaatgagaaagcactcagattagttgaa
caagcattgcagaagacccctgatcaactatacatgatacgctacgcagcaaaattttac
agaagagctggagaagtgggaaaagctttggaacttttggagaaaggattgaaaattatc
ccaaactctgccttcttccatcatcaaataggtctgtgttacaaaatcaaactaatccag
ctgatcaaatctgacagcaaaagcagtcgcaattttaaacttcaacgaaaagttacattg
attaatcaatgcaagcaccattttgatgaagcattcaggctcaagccatcacttatcatg
gcaaaactagcatttgcagaaatctgcacaatagataaagaccatgacaaagcagaagcc
atctacaaaaacttattgaatttggaatatattaccttggaaaataagcaagaaatatat
cttgaggctgggaaatttgaattttatcacaaaaaatctgaattaaatgccagcaaatgt
tatctggaaggatttaaaatcaaacatgcttcaaaggcacgagaaaggtgtcgctactac
ttggagaagacagctgagaatcggctttgcgagaaccgaagagatatccaggctttttgc
attcgtgggatcatacatatggtggatgggcaggaatgctttgaaaaggttttggagatt
gaacgtagcaacgaagaatag
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