Scyliorhinus canicula (smaller spotted catshark): 119951401
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Entry
119951401 CDS
T11175
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119951401 (pcdh19)
Cell adhesion molecules [BR:
scau04515
]
Cadherins
Protocadherins
119951401 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
119951401
NCBI-ProteinID:
XP_038630486
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Position
17:complement(77096692..77239118)
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AA seq
1111 aa
AA seq
DB search
MNREINRYRAGMDVLLLLALLLWARAGAVTNLKYSVMEEERAGTVIGNIAKDAGFSTWEQ
TVPLFRVLSNSAPHLVEINPLTGLLVTKQKIDRDLLCRQSPKCLISLEEMVNSMEIYVIK
VEILDLNDNSPSFPTEQIDLEISETASPGTRIPLESAYDPDAGEFGVQTYQITPNDLFGL
EIKSRGDGSRFAELVVERPLDRELQSHYSLLITALDGGEPPNAGTAQLNIRVIDSNDNYP
VFEQSAYTVNVLENAPANSLVIHLKASDPDEGTNGQVVYSFNSYVPDGTRELFQLDPRTG
AITVKGLIDYEEGSVYELDVQAKDLGPNSIPAHCKVTVNVVDVNDNVPVITLFSVSSETV
EVSEAAPPGYVIGLVRVSDHDSGPNGRVQCRLLGDVPFKLQEYESFYTVLVDGRLDRERR
DLYNLTILAKDGGSPSLQATRSFTVRVADENDNPPVFSKPFYQVVVQENNTPGSHLLSVS
ARDRDLGLNGSVSYRIVPSQVKDMPVFTYVSINPTSGDVYALRSFNHEQTRAFEFRVVAK
DGGSPALEGNSTVRVVVLDVNDNVPVITAPPLVNGTAEVYIPRSAAAGSLVAAVKADDYD
EGDNGRLTYQIAEGARGLFHMDQTTGEIRTSRGFGDQASSAAAPQASYELVVVAQDHGKP
ALSSTALVVVYLSPALDARESAGSLNLSLVFIIALGSIAAILFVTMIFVAVKCKRDNKEI
RTYNCRVAEYSYGQQKKPKKKGKISKNDIRLVPRDMEETDKMNVVSCSSLTSSLNYFDYH
QQTLPLGCRRSEATFLNVESQNSRNTTGNHVYHTFTSTQNSQQQPDLIINGMPLPESENY
SIESSYVNSRQHLIKSSSTFKDLERNSLKDSGHEESDQTDSEHDAHRGLYCDTAINEVLN
TTLNSTGSQVPEQDQNEGFTCMEECRILGHSDRCWMPRVAVPTHAKSPDRGKNVIALSIE
TTSVDSEPYENGSSKRTFATFGKDPRDRTTENDKTDLKGKRTFDLPICSPKVNGSVSSSQ
ETSNGIDISSPASTPVHLGSPSSSRPPVTYSVMHCPITRDLDLPVNQTSSHPSEPGSREA
DSEHLREINHLLHDCREKDSLGIKRIQDIVL
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgagaaatcaacaggtaccgagccgggatggatgtgctgctgctgctcgccctg
ctcctgtgggctcgggctggcgccgtgactaatttgaaatactcggtgatggaggaggaa
agagcggggacggtgatcggcaacatcgcgaaagacgccggcttctcaacttgggagcag
accgtgcctcttttccgcgtcttgtccaactcggcgccgcatctggtggagatcaacccc
ctgaccggattactggtgaccaagcagaagatcgaccgggacctgctgtgcaggcagagc
cccaagtgcctgatctccctggaggagatggtcaactccatggagatctacgtgatcaaa
gtggagatcctggacctgaacgacaactcgcccagcttccccaccgagcagatcgacctg
gagatctcggagaccgccagcccgggcaccaggatcccgctggagagcgcgtacgacccg
gacgccggggagttcggggtgcagacctaccagatcacccccaacgacctgttcggcctg
gagatcaagagccggggcgacggctcgcgtttcgccgagctggtggtggagaggccgctg
gaccgcgagctgcagtcgcactacagcctcctgatcaccgcgctggacggcggcgagccc
cccaacgcgggcacagcccagctcaacatcagggtgatcgactcgaacgacaactacccg
gtgttcgagcagagcgcctacacggtcaacgtgctggagaacgcgcccgccaactcgttg
gtcatccacctgaaggcgtccgacccggacgaggggacgaacggccaggtggtgtactcc
ttcaacagctacgtgccggacgggacgcgggagctgttccagctggacccgcggacgggg
gctatcaccgtcaaggggctcatcgactacgaggagggcagcgtgtacgagctggacgtg
caggccaaggacctgggccccaactccatcccggcccactgcaaggtgacggtcaacgtg
gtggacgtgaacgacaacgtgccggtcatcaccctcttctcggtcagcagcgagacggtg
gaggtgagcgaggcggcgccgcccggctacgtgatcggcctggtgcgggtgtccgaccac
gactcgggccccaacggccgcgtgcagtgccggctgctgggcgacgtgcccttcaagctg
caggagtacgagagcttctacaccgtgctggtggacggccggctggaccgcgagcggcgc
gacctctacaacctgaccatcctggccaaggacggcggctcgccctcgctgcaggccacc
cgctcgttcacggtgcgggtggcggacgagaacgacaacccgccggtcttctccaagccc
ttctaccaggtggtggtgcaggagaacaacacgccgggctcgcacctgctctccgtctcg
gcccgcgaccgcgacctgggcctcaacggcagcgtgtcgtaccgcatcgtgccgtcgcag
gtcaaggacatgcccgtcttcacctacgtgtccatcaaccccacctcgggcgacgtgtac
gcgctgcgctccttcaaccacgagcagacgcgcgccttcgagttccgcgtggtggccaag
gacggcggcagcccggcgctggagggcaacagcacggtgcgcgtggtggtgctcgacgtc
aacgacaacgtgccggtcatcaccgcgccgccgctggtcaacggcacggccgaggtctac
atcccgcgcagcgccgccgccggctcgctggtggccgccgtcaaggcggacgactacgac
gagggcgacaacggccgcctgacctaccagatcgccgagggcgcccgcggcctcttccac
atggaccagaccacgggcgagatccgcaccagccgcggcttcggcgaccaggcctcctcc
gccgccgctccccaggccagctacgagctggtggtggtggcccaggaccacggcaagccc
gccctctcctccaccgccctggtcgtcgtgtacctgtcgccggccctggacgcccgcgag
tcggccggctccctcaacctgtcgctggtcttcatcatcgccctgggctccatcgccgcc
atcctcttcgtcaccatgatcttcgtggccgtcaagtgcaagcgggacaacaaggagatc
cggacgtacaactgcagggtggccgagtactcgtacgggcagcagaagaagcccaagaag
aagggcaagatcagcaagaacgacatccgcctggtgccccgggacatggaggagacggac
aagatgaacgtggtcagctgctcctcgctcacctcctccctcaactacttcgactaccac
cagcaaactctgcccttgggctgccgcaggtcggaggccaccttcttaaacgtggagagt
cagaattcgaggaacacgactggcaaccacgtgtatcacaccttcaccagcacccagaac
tcccaacagcagccagatcttatcatcaatggcatgcccctgccagagtcagaaaactac
tccattgagtcaagctacgtaaacagcagacagcacctcattaaaagtagttccacattc
aaagacctggaaagaaacagtctcaaggacagtggacatgaagaaagtgaccaaactgac
agcgaacatgatgcgcatcgaggcctgtattgtgacacagccatcaatgaagtgttgaat
acaactcttaattccaccgggtctcaggtacctgaacaagatcagaatgaaggctttaca
tgcatggaagaatgccgaattttaggtcactctgacagatgttggatgccacgggtcgca
gtgccaacccatgccaaatcacctgaccgtggtaaaaatgttattgcactgtccatcgag
accaccagtgtggactcagaaccctatgagaatggcagttcaaagagaacttttgcaact
tttggcaaagaccccagggatcgtactactgagaacgataaaacagatttgaaaggaaag
aggacatttgatctacccatctgcagcccaaaagtgaatggttctgtctccagcagccag
gaaacaagcaacggcattgacatttcaagtcctgccagcacacctgtgcatttgggcagc
ccctcgtccagcaggcctccagtcacatactctgtgatgcactgccccataacacgtgac
ctcgacctgcctgtcaatcagacctcctcgcatccatcagagccagggtcccgggaagca
gactcagaacatctccgagagatcaaccacctcctgcatgattgcagagaaaaggactcg
ctgggcatcaagcgaatacaggacattgtgctctga
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