Scyliorhinus canicula (smaller spotted catshark): 119951888
Help
Entry
119951888 CDS
T11175
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119951888 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119951888 (cpsf2)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119951888 (cpsf2)
U7-dependent histone pre-mRNA processing factors
119951888 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
119951888
NCBI-ProteinID:
XP_038631179
LinkDB
All DBs
Position
2:complement(30572054..30607405)
Genome browser
AA seq
785 aa
AA seq
DB search
MTSIIKLTTISGVQEESALCYMLQVDEFRFLLDCGWDESFSMDIIDALKKYVHLVDAILL
SHPDPLHLGALPYAVGRLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEEFSLFTLDDVD
AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMISRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIALDTA
GRVLELAQLLDQIWRTKDAGLSVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQSDMECGFSRDLFIQWCQDPKNSVILTYRTT
PGTLARYLIDNPITKKMDIEIRRRVKLEGKELEEYLEKEKLKKEAAKKQEQEKERDVDSS
DESDIEEDMDQPLAGKTKHDLMMKSESSRKGSFFKQAKKSYPMFPATEERMKWDEYGEVI
RAEDFLVPELQAAEEEKSKLDSGLTNGEEPMDQDLSDVPTKCISALETIEIRARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPESSLDLAESCKAFGGKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVAKVDTGVVLEEGELREDEEGE
MQVDAPSTTHSSEQVAAQQKAMKSLFDDDEKETSEDLDVIPTLEPLSANEVPGHQAVFIN
EPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCEDYYKIRDLLYE
QYAIV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgatcatcaaactgaccaccatttctggagtccaggaagaatctgccctctgc
tatatgctgcaggtggatgaattccgctttcttcttgattgtggctgggatgaaagcttc
tccatggatataattgatgcacttaaaaaatatgttcatttggttgacgcaatcctactt
tctcacccggatcccttacacctgggagctctcccttatgctgttgggaggctgggctta
aactgtgcaatttatgccacaattcctgtttacaagatggggcagatgtttatgtacgat
ctttatcagtcgcggcacaacacggaagagttctccctgtttactttggatgatgtggat
gcagccttcgacaagattcagcaactgaaatattcccaaattgtcaatttaaaaggtaaa
ggacacggcctatccataactcctttgcctgcaggtcacatgattggaggaacaatttgg
aagattgtgaaagatggagaggaggaaattgtgtatgcagttgactttaaccataagcga
gaaatccatctgaatggatgttcactggaaatgattagccgaccctcattactcatcaca
gattctttcaatgccacctatgttcagccccgaagaaagcaacgagatgaacaattgctc
actaatgtcttggagactttgcgtggtgatggtaatgtgctcatcgctttggacactgct
ggcagagtgctggaattagcacagcttctggaccagatctggaggaccaaggatgctgga
ctaagcgtttattctcttgctttactgaataacgtcagctataatgtggtggaattttca
aaatcacaggtagaatggatgagcgacaagttaatgagatgttttgaagacaaacgaaac
aatccctttcagtttcgtcacctttctttgtgccacagcctttcagacctggctcgagtg
cccagtccaaaggttgtattggctagtcaatctgacatggaatgtggattttcacgagat
cttttcatacagtggtgtcaggacccaaaaaactctgtgatcctcacttacaggacaaca
cctggaacactggcaagatatttgatagacaatccgatcaccaaaaaaatggatatagag
ataagacgtcgtgtaaaattggaagggaaagagttggaagagtatctagagaaggagaaa
ctcaagaaggaggcagctaagaagcaggaacaagagaaggagcgagatgttgactccagt
gatgagagtgatattgaagaagacatggaccagccactggctggcaaaaccaaacatgat
ctcatgatgaaaagtgagagcagtcgcaagggaagctttttcaaacaggctaagaaatca
taccccatgttcccagctacagaagagagaatgaagtgggacgaatatggggaagtaata
agagctgaggatttcttagttccggaacttcaggcagcagaagaagaaaagagcaaactt
gattctggtctgactaatggtgaggagcctatggatcaagacttatctgatgttccaaca
aagtgtatctcagcattagaaaccatcgaaatcagagccagagtgacatatattgattat
gaaggacgctcagatggtgactctatcaaaaaaattattaatcagatgaaacctcggcag
ttgattattgttcatgggcctccagagtctagcctggatcttgctgaatcctgcaaagca
tttggtggaaaggacattaaagtttacacgccaaagcttcaagaaacaattgatgctact
agtgagactcatatctaccaggttagactaaaggactctttagtcagttctcttcagttc
tgtaaagcaaaggatgcagagttagcctggattgatggtgtcttggacatgagggtggca
aaggtagatactggggtcgttctggaagagggggagttaagagaggatgaggaaggggaa
atgcaggttgatgctccctcaactacacacagctctgagcaagtcgcagctcagcaaaaa
gcaatgaagagcctcttcgatgatgatgaaaaagagaccagtgaagatcttgatgtaatt
cccacgctggaaccattatcagcaaatgaggttcctggtcatcaagcagtcttcattaat
gagccacggttatccgattttaaacaagttcttttacgggaaggtattcaagcagaattt
gttggaggtgtgctggtctgcaacaatttggtggctgttcgaagaactgagacaggacgc
attggactggagggatgtttgtgtgaagactattataaaatacgggaccttttatatgaa
cagtatgcaattgtgtaa
DBGET
integrated database retrieval system
