Scyliorhinus canicula (smaller spotted catshark): 119952872
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Entry
119952872 CDS
T11175
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03030
DNA replication
scau03410
Base excision repair
scau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119952872 (pole)
03410 Base excision repair
119952872 (pole)
03420 Nucleotide excision repair
119952872 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scau03032
]
119952872 (pole)
03400 DNA repair and recombination proteins [BR:
scau03400
]
119952872 (pole)
Enzymes [BR:
scau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
119952872 (pole)
DNA replication proteins [BR:
scau03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
119952872 (pole)
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
119952872 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
NAD_binding_9
Motif
Other DBs
NCBI-GeneID:
119952872
NCBI-ProteinID:
XP_038632431
LinkDB
All DBs
Position
1:complement(26205306..26362746)
Genome browser
AA seq
2283 aa
AA seq
DB search
MVLQNSGRLRAERGQAAADFNYSDDGSSLPALKRLERSQLSDEMDARFGFDRLKDPGEKT
GWLINMHPAEILDEDKRMISAVDYYFIEEDGNRFKVALPFNPYFYVATKKGCEREVSSFL
SKKFQGKISKLSTIPKEDLDLPNHLVGLKRLYIKLAFNTVDDLIKVRKEISPAVRKNKER
EKSNDAYTVMLSSALAGGNVTEEEGTSKKISDQMENIIDIREYDVPYHVRVSIDLKIQVA
HWYNIRIRGGVYPPEIIRRDDLVERPDPVVLAFDIETTKLPLKFPDAENDQIMMISYMID
GQGYLITNREIVSEDIEDFEFTPKPEYEGPFIVFNEPDEVSLIRRWFEQVQENKPNILVT
YNGDSFDWPFVETRAAVHGLNMYNEIGFQKDSQGEFKASQSIHMDCYRWVKRDSYLPVGS
QNLKAAAKAKLGYDPVELDPEDMCRMATEEPQTLATYSVSDAVATYYMYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQVFNKLTNDGHVLDSETYVG
GHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEHTMRHAIEEEEKVPMEQVTNFQEVCD
EIKKKLNYLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAVVDEAICAACDFNKPGA
HCQRKMTWTWRGEFMPASRSEYHRIQQQLESEKFPPAFPNGRPQAFHELSREEQAKYEKK
RLADYCRKAYKKIHVTKIEERVTTICQRENSFYVDTVRAFRDRRYEFKGSHKVWKKKLSA
AVESGDATEIKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTGAN
IIKQARELIEQIGRPLELDTDGIWCVIPNSFPENFVVKSSNAKKSKITISYPGAMLNILV
KERFTNEQYQELVDPATLTFVTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKA
ANMPDLELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRFVIS
KKPEGSPVTERAIPLAIFQAEPSVKKHYLRKWLKSPSLQDLDIRLILDWDYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDVYKQKKINELFTNTGVRQVTSNQHP
DQQSDIGDLEDFGVSKCRVQPIIPISTKRRRGMNEESQEISQDLELTQSWREILGPPPPL
GTTKNERIVWLRYQKKKWELQSKQRQARRKRRKLDDGAAAPGRPIRDGPKTSLSSFLRRT
ARTILDMPWQIVQIAETSQPGCFKLWAVVGNDLHCIKLNIPRVFYVNQRIPKADDSAVYK
KVNRILPRSNIVYNLYEYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQLG
CVCMVNRQLSLYLAGREAETFELEQLEMRSLAQFNYLEPGSIRHMYFYHNSQGNKALFGL
FIPSQRKASIFVLDTVRSNQMPNLNNLYAAERTAMLEKLNEELLPPDKHTFEVRAEKDPK
LVYRAIQRLLLSYKDEKRGPTLIAVQSKWDLKRLKNGMPVLDEFPMVPVHVNDDISYGVL
DWQRHGVRRMIRHYLSLDSILSKAFEMARYYHIPIGNLPDDISTFGSDLFFSRHLRRHNH
LLWLSPTSRPDLGGKEADDNRLVMEFDERSTVEINNPGCYSTVSVELDIQSLAVNTILQS
HHINDMEGASSIGVSFDVIQQASLEDMMAGNQAANALASYDEAALCSNTFRILKSMVVGW
VKEITHYQNVYADNQVMHFYRWLRSPSSLLYDPALHRILHNMMKKLFLQLVAEFKRLGSS
VIYANFNRIMLCTKKRRTEDSIGYVEYITKSIHSREIFHSLSISLSRCWEFLLWMDPANY
GGIKGKPPSSILNKEVTNDKETKEHGEDGSNDDVEGIHSEDEEGGTDVEDLLDNTWNIMH
YLPQASSCQSYFLMIVSAYIVAVYHSMKEELRRNAPGCTPIKRRGASQISQEPAGETGAS
AGMITFSQEYVSNELTQNFFTITQKIQKKVSGNRHSTEPSEMFPVLPGSYLPFNNPALEF
IKSVCKILSLDSNITNQVNKLKRDLLRLIDVGEFSEEAQFKDPCQSYILPEIICKNCNFC
HDLDLCKDPSILQEDGTILPKWCCSNCQTEYDSDSIEMELVEALKKKMMAYTLQDLICLK
CKGIKEANMPIYCSCARDFDLTISMKGFMGQIQVFRNIARHYNMPFLLETVDWMFRMNTH
LKP
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgcagaacagtggccggctgagagccgagcgagggcaggccgccgccgacttc
aactactctgatgatggctcatcccttcctgcactcaagcgcttggagcgcagtcagttg
tcagatgagatggatgcaaggtttggatttgaccgactcaaggatccaggcgagaagact
ggctggcttatcaacatgcacccagcagaaatcttggatgaagacaagagaatgatcagt
gctgtggattattattttatagaggaggacgggaataggtttaaggttgctctgcctttc
aacccttatttctatgttgccacaaaaaagggctgtgagcgtgaggtttcatcattcttg
tccaagaaatttcaaggcaagataagtaaactatcaaccattccaaaagaggacttggat
ctgcctaaccacttagttggcttgaagagactctatattaagctcgcctttaatacagtt
gatgacttgataaaagtccgaaaagagatttcgccagctgtaaggaaaaacaaagaaagg
gagaaatcaaatgatgcatatactgttatgttgtccagtgccttggccgggggcaatgtg
actgaagaggaaggaacatccaaaaaaatttctgatcaaatggaaaacataattgacatc
cgggaatacgatgtaccctatcatgttcgagtatccattgatctgaagattcaagtggca
cattggtacaatatacgaattcgtggtggtgtctatcctcctgagattatacgtagggac
gacttggttgagcgaccagatcctgtcgttttggcatttgacattgaaactacaaaattg
ccattgaaatttccagatgctgaaaatgatcagatcatgatgatttcctacatgattgat
ggacagggatatttgataacaaacagggaaattgtatctgaagatattgaggattttgag
tttacaccaaagccagaatatgagggtcctttcattgtatttaatgaaccagatgaggtg
agcttaattcgaaggtggtttgaacaggtccaggaaaataaacctaacatacttgtgacg
tataacggtgactcttttgattggccatttgtggagacacgagctgcggtgcatggcttg
aacatgtacaacgagattggctttcagaaggacagtcaaggcgagttcaaagctagtcag
agcatccacatggactgctacaggtgggtgaagcgagatagttaccttcctgtgggcagt
caaaacttgaaggctgcagctaaggccaaactgggatatgacccagtggagttggacccc
gaagacatgtgtcgaatggccactgaggaaccacagaccttggccacatattcagtctct
gatgctgtggctacctactacatgtacatgaagtacgtgcaccccttcatttttgctttg
tgtacgatcatccctatggagcctgatgaggtgctacgaaaaggatctgggacactttgt
gaggcactcctgatggtgcaggcttttcacgccaacataatcttcccgaacaagcaagaa
caagtctttaataagctaacaaatgatggtcacgtgcttgattcggagacttatgtagga
ggacatgtggaggctttggaatcgggagtttttcgcagtgacataccatgccgatttaaa
atgaatccagcagcatttgatttcttgctgcaacgagtggaacacaccatgcgacatgcc
attgaggaggaggagaaagttcccatggagcaggttaccaatttccaagaggtctgtgat
gagattaaaaagaaactgaactatttgaaggaagttccaaacaggattgaatgtccgctc
atttaccatttggatgttggggcaatgtacccaaacatcattctgaccaaccgtttacag
ccttctgctgtagtggatgaagccatctgtgcagcctgtgatttcaacaaaccaggtgca
cactgtcagcgcaagatgacctggacatggcgaggagagtttatgccagcctcgcgcagt
gaatatcatcgtattcaacagcagcttgaatctgagaagtttcctcctgcttttccaaat
ggacggccacaagctttccatgagctatcccgtgaagagcaggccaagtatgaaaagaag
cgactggcagactattgccgcaaagcttacaagaaaatccacgtcactaagattgaggaa
cgtgtaacaacaatttgtcaacgtgaaaattctttctatgtggatacagtccgagctttc
cgtgataggcggtatgaatttaaaggctcacacaaggtttggaagaagaagctgtcagct
gctgttgaaagtggagatgctacagaaatcaagcgttgtaaaaacatggagatcttgtat
gagtccctgcagctggcccacaagtgtattctaaactccttctatggctatgtcatgcgc
aaaggggctcgttggtattctatggaaatggctgggattgtctgtcacactggagctaat
attatcaaacaggccagagagttgatcgaacaaattgggcgacccttggagctggacact
gatggcatttggtgcgtcattcctaattctttcccagagaactttgtcgtcaagtcaagc
aatgctaagaagtcgaagattacaatctcctaccctggtgctatgcttaatatcctggtg
aaggaacgattcacaaatgaacaataccaggagcttgtggaccctgcaacactgaccttt
gtcacccgctcagaaaacagcatcttttttgaggttgatggtccttatctggccatgatt
ctgccagcttccaaagaagaaggaaaaaaactcaaaaaaagatatgctgtatttaatgag
gatggttcactggctgaactaaagggctttgaagtgaagcgccgtggggaattgcagctc
atcaagatttttcagtcttctgtctttgaggcctttctgaaaggcaccacgctggaagaa
gtgtatgcatctgttgccaaggtagcagattactggttggatgtactatacagcaaggca
gctaacatgcctgatttggagctgtttgaattgatctctgagaatcgatcgatgtcccgt
aaattagaggattatggagaacaaaagtctacctccataagcacggccaaaaggctcgcc
gaatttcttggggatcaaatggtgaaggacgcagggctcagttgccgttttgtcatttcc
aagaaaccagagggatccccagtcactgaaagagcaattccactggccattttccaggca
gaaccaagtgttaaaaagcactatctaaggaagtggttgaagagtccttccttacaggac
ctggacattcgattaattttggattgggattattacattgagcgacttggcagcgccatc
cagaagattatcaccattcctgcagcccttcagcaggtgaagaatccagtcccacgggtc
cgacatcctgactggcttcacaagaaactgttagaaaagaacgatgtttacaaacaaaag
aaaattaatgagctcttcactaacactggagtcaggcaggtgacatccaatcagcatccc
gaccaacaatcagatattggtgatctggaagattttggagtctccaaatgtagagtacaa
ccaattatcccgatcagcacaaagagaaggcgtggtatgaatgaagagagtcaggaaata
tctcaagacttggaattaactcagtcttggagagaaatattgggacctccaccgccactg
ggaactacaaagaatgaacgcatagtgtggctgagataccaaaagaaaaaatgggagctg
caatcaaaacaaaggcaggcccgcagaaagaggagaaagcttgatgatggtgcggctgca
ccaggtagacctattcgagatggtcccaaaactagcctcagcagctttttgcgccgaact
gcccggaccattctagatatgccatggcaaattgtgcagattgcagaaacaagtcaacct
ggctgcttcaaactgtgggctgttgttggtaatgatttacattgcatcaaactcaacatc
ccgcgagtgttctacgtcaatcagcgcatcccgaaagcagatgatagtgccgtttacaag
aaggttaaccgtatccttcctcggtccaatattgtttacaacctatatgaatattctgtg
ccggaagacatgtaccaagagcacatcaatgagattaatgctgacctctctgctccagac
attgagggagtctatgaaacacaggttcccctgctctttcgtgccctcgttcaacttgga
tgcgtctgtatggtcaatcggcagttatcactctatcttgcaggacgggaagcagaaacc
tttgaattggagcaactggaaatgcgctcattagcacaatttaattatctggaaccaggt
agcatccgacacatgtacttctatcacaattctcaaggaaataaggccctatttggcctg
ttcatcccttctcaacgaaaggcctccatatttgttcttgacactgtgcgcagtaatcag
atgccaaacttgaataacctgtacgcagctgagcgcactgcaatgctggagaaattgaat
gaagaactactgccacctgataagcacacatttgaggttcgggcagaaaaggacccaaag
ttagtctacagagcgattcaacgccttctgttgagctacaaggatgaaaaaagaggtcca
actcttattgctgtacaatcgaagtgggacctgaagaggctgaaaaacggaatgccagtt
ctggatgaatttccgatggtgcctgttcatgtaaatgatgatatcagctatggtgtattg
gattggcagcgtcatggtgttcgtagaatgatcagacactacctcagcctggatagcatt
ctgtccaaagcatttgagatggccagatattaccacattcccattggaaatcttccagat
gacatctcaacctttggatcagatctcttcttttccagacaccttagacggcacaaccat
ctcttgtggctttccccaacatctcggcctgatctgggagggaaagaggcagacgataat
cgtctggtgatggagtttgacgagagatcaacagttgagattaataatccagggtgttac
tctacagtttctgtggagttggatattcagagcttggctgtgaatactatccttcagtcc
catcacattaacgatatggagggagcatccagtattggtgtcagctttgatgttatccag
caagcttcactcgaagacatgatggctggtaaccaagcagctaatgcacttgccagctat
gacgaggcagcgttgtgctccaacacattcagaattttgaaaagtatggttgttggctgg
gtgaaggaaatcacccactatcagaatgtgtatgctgataaccaagtgatgcacttttac
cgttggctgcgatcaccctcctcactgctgtatgaccctgcactgcaccgtattctccac
aatatgatgaagaagctgtttctgcagctggtagcagagtttaaaaggttgggttcatct
gtgatctatgccaatttcaaccgtataatgctgtgcaccaagaagcgacggactgaggat
tcaataggatatgtggaatacatcacaaagagcattcattcccgtgagattttccactcc
ctctccatctcgctttctcgctgctgggagtttctgctttggatggacccagccaattac
ggtggcattaagggtaaacctccctccagcattctcaacaaagaggtgacgaatgataaa
gaaacaaaggaacatggtgaagatggcagcaatgatgatgttgaagggattcattctgaa
gatgaggaaggtggcactgatgttgaagatcttttggacaatacctggaatattatgcat
tatttgccacaagcatcttcttgtcagagctacttcctcatgattgtctcagcttatatt
gtagctgtataccacagcatgaaggaggaattgagacgcaatgctccaggatgtactcct
ataaaacgacgaggagccagccagatctcacaggagccagcgggagaaactggtgcttcc
gcaggaatgatcaccttctctcaagagtatgtatctaatgagctcacacaaaactttttc
acaatcactcagaagattcagaagaaggtaagcggcaacaggcattccactgaaccctcc
gagatgttcccagttctgccaggttcctaccttccattcaacaacccagcactggaattt
atcaaatcagtctgtaagatattgtctctggattcaaacataactaaccaggtgaataag
ttgaaacgggatcttctacgcctaattgatgtgggggaattctctgaagaagctcagttt
aaagacccctgccagtcctacatactacctgagattatctgcaaaaattgcaacttttgc
catgatctagacctttgtaaagacccttccatcttacaggaggatggcactatattaccc
aagtggtgctgttctaattgccagactgaatatgactcagattccatagaaatggaatta
gtagaagcactgaagaagaaaatgatggcctatacgcttcaggatttgatttgtttaaaa
tgtaagggcatcaaagaagccaacatgccgatttattgtagttgtgcccgggacttcgat
ttgaccatttcgatgaagggatttatggggcaaatccaggtgttcagaaatattgccaga
cactacaacatgcccttccttttggagactgttgattggatgttcaggatgaatacacac
ttgaagccatga
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integrated database retrieval system
