Scyliorhinus canicula (smaller spotted catshark): 119952909
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Entry
119952909 CDS
T11175
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119952909 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119952909 (ddx5)
03009 Ribosome biogenesis [BR:
scau03009
]
119952909 (ddx5)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119952909 (ddx5)
Spliceosome [BR:
scau03041
]
Complex A
U1 snRNP components
U1 related factors
119952909 (ddx5)
Complex B
119952909 (ddx5)
Ribosome biogenesis [BR:
scau03009
]
Eukaryotic type
Pre-60S particles
Helicases
119952909 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
119952909
NCBI-ProteinID:
XP_038632466
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Position
18:10581775..10593862
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AA seq
654 aa
AA seq
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MMPGYERGDRSRERGGFGSGGPRFGGSRNAPPPGRKFGQPGEKLRKRKWDMEELPKFEKN
FYVEHIDVLNRPVQDIEQYRRTKEITVKGIICPKPVLNFVEASFPTYVLDVLMQQNFTEP
TAIQAQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQHVAHDYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINIGALELSANHNILQIIDVCQEVEKDDKLLRLMEEIMSEKENKTIIFVETKRRCDEL
TRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQANDLISVLREANQALNPKLIQMVED
RGSGRSRGRGGYKDDRRDDRRDRFSGSNRGGGYNGFRNRDSLDRVYGQGGRENGFNTQSY
TSAGQNAFGSGKFGSTNNFGSMSRFGNSSSFPGSVSQGAGSYGSQNQNGYKAIGGKVQQF
GSGHSGPNAMQSNGIGQQPSVGAPYQYPPPPLMGMGFQAQTGYPMPLAYGGIQK
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctggttacgaaagaggtgaccgtagtcgagagcgcggcgggttcggttcgggt
ggacctcgcttcggtggcagcaggaacgcgcctccacccggcaggaaattcgggcagccg
ggggagaagctgaggaaaagaaaatgggacatggaggagctgcccaaattcgagaagaac
ttctacgtcgaacacatagacgtgctgaaccgacctgtgcaagatattgaacaatacaga
agaaccaaagaaatcacagtaaaaggaattatttgtcctaaaccagttttgaactttgtt
gaagcaagttttccaacatacgtattggatgttttaatgcagcaaaatttcacagaaccg
actgctattcaggctcaaggttggcctgttgcgcttagtggcaaggacatggttgggatt
gcacagactggatctggtaaaacacttgcttacttgctacctgccattgtgcacataaat
caccagcctttcctggaacgtggagatggtcccatttgtctggtactggcaccaaccaga
gagctggctcaacaagtacaacatgtggcacatgattatggaagagcatctcgcctaaaa
tcaacatgtatttatggaggagcgccaaagggcccacagattcgggatcttgaaagaggt
gtggaaatctgtattgcaacacctggtagattgatagactttttggaagctgggaagacc
aatctcaggagatgtacatatctggtacttgatgaagcagaccgcatgcttgatatgggc
tttgaaccacagatccgtaaaattgttgaacagatccggcctgaccggcaaaccttgatg
tggagtgcaacttggcccaaagaggttcgacagttggctgaagatttcttgaaagaatat
gttcaaattaacattggtgcattggaacttagtgccaatcacaacatcctgcagattata
gatgtgtgccaagaggttgagaaagacgataaattgctgaggttgatggaggaaataatg
agtgaaaaagaaaacaaaactataatttttgtggagaccaaacggagatgcgatgaactt
acaaggcgaatgaggagagatggatggccggcaatgtgtattcatggtgataagagtcag
ccagagcgtgactgggttctaaatgagtttcggtcaggcaaagcaccaatccttattgcc
acagatgttgcatctagaggtttagatgttgaagatgtgaaatttgtcatcaattatgac
taccctaactcttctgaagactatattcaccgcattgggcgaactgcccgcagttccaaa
actggcaccgcttacacgttctttactcctggcaacataaagcaagcaaatgaccttatc
tctgtgcttcgtgaagcaaatcaggctctcaacccaaaactaatacagatggtagaagac
agaggttcaggtcgttccaggggtagaggtggctataaagatgatcgccgtgatgataga
agagacagattctctggttccaacaggggtgggggttataatggctttaggaatagggat
agcttggacagggtatacggacaaggaggaagggagaatggtttcaacactcaaagttac
acctcagccggccaaaatgcctttggttctgggaaattcggctccacgaacaatttcgga
agtatgtctcggtttggaaattcctccagttttccaggatctgttagccagggagctggt
tcatatggcagtcagaatcaaaatggttacaaggctattggtggcaaagtgcagcagttt
ggaagtggtcattctggtcctaatgccatgcagagcaatggcattggtcagcagccatct
gttggagctccgtatcagtatccacccccacctttaatggggatgggtttccaggcacaa
actggttaccctatgcctcttgcatatggaggaattcagaagtaa
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