Scyliorhinus canicula (smaller spotted catshark): 119952941
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Entry
119952941 CDS
T11175
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03013
Nucleocytoplasmic transport
scau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119952941 (upf1)
03015 mRNA surveillance pathway
119952941 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119952941 (upf1)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119952941 (upf1)
5.6.2.5 RNA 5'-3' helicase
119952941 (upf1)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119952941 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119952941 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119952941
NCBI-ProteinID:
XP_038632506
LinkDB
All DBs
Position
18:<110294512..110356703
Genome browser
AA seq
1051 aa
AA seq
DB search
QRSFIFTQVNGPDGVLQNGAVDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKS
REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRIKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIG
MIGASPSHVAAMNIPIPFNLMMPPMPPPGYFGQANGPAIGRGIPKGKVGRGARQRNRGMG
NQLNSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
caacgatccttcatcttcacacaggtgaatggaccagacggagttctccagaatggagca
gttgatgatgccgttgccaaagcaagtcagttgttaccggaactgaactttgaggaggat
gaagaggatacgtattacaccaaggaccttcctttgcatgcctgcagttactgcggaatt
catgatccagcctgcgttgtttactgtaataccagcaagaaatggttctgcaatggccgt
ggaaacacctctggcagccatatcgtgaaccacctggtgagagccaagtgcaaggaagtg
actctgcacaaagatggaccactgggagagacagtcctggagtgctacaactgtggttgt
aggaatgtattcctcttgggcttcatccctgccaaggctgactctgtggtggtgctgctg
tgcagacaaccttgtgccagtcagagcagcctgaaggatatcaactgggatagttcccag
tggcagccactaattcaggaccgttgctttctgtcttggctggtgaagattccatcagag
caggagcaactgcgagcccgtcagataacagcacagcagattaacaaactggaggaactc
tggaaggataatccttctgctactcttgaggatttggagaagcctggagtggatgaagag
ccacagcatgtactccttcgttacgaggatgcttatcaataccagaacatctttggtcca
ttggtcaagctggaggctgactatgacaagaagctaaaggagtcccagactcaggacaat
attactgtgagatgggatctgggtctgaacaagaaacggattgcatacttcaccttgccc
aagacagactctgacatgcgcctgatgcagggcgatgagatctgtctgcgctacaaaggt
gacttggcacctctttggaaaggaatcggccacgtgatcaaagtcccggacaattatggg
gatgagatcgctattgaactccgcagcagtgttggcgctccagttgaagtaactcacaac
ttccaagtggattttgtctggaaatcaacttcatttgacagaatgcaaagtgcgttgaaa
acctttgctgtggatgagacctctgtctctggttacatataccacaaattgcttggccat
gaggtggaggacgtgattattaaatgccagctgccgaaacgcttcaccgcccatggttta
cctgacctcaatcactcacaggtttatgccgtgaagactgttctccagcgccccctcagt
ctgatccagggccctccaggcactgggaaaactgtcacctctgctactatagtgtatcac
ctagccagacaaggcaatggtcccgtcctggtatgtgctccaagtaacattgcagtagac
cagttgactgagaagatccatcacacagggctgaaggtggtgcgcctatgtgccaagagt
cgtgaggccatcgattcaccagtttctttcctggctctacataaccagatccgcaacatg
gatagcatgcctgaattgcaaaagttgcagcagttgaaggatgagactggcgaactgtca
tctgcagatgagaaacgctaccgtgcactcaaaaggacagcggaacgggagctgcttatg
aatgcagatgttatttgctgtacctgtgtaggagctggtgacccacgccttgctaagatg
cagttccgttccattctgattgatgagagcacacaggccacagaaccggaatgtatggtc
cccgtggtcctgggagcaaagcagctgatcctggtgggtgaccattgccagcttggccca
gttgtcatgtgtaagaaagctgctaaagctggtctgtctcagtcactatttgagcgtctg
gttgttcttgggatccggccaattcgtctgcaggtccaataccggatgcatccagctctc
agtgcctttccatccaatatcttctatgagggctcactgcaaaatggcgtcactgcagcg
gatcgtataaagaaaggcttcgacttccagtggccacagcctgacaagccaatgttcttc
tatgtgacccaaggccaggaggaaattgctagttcggggacctcctacctcaatcggact
gaggcagccaacgtggagaagatcaccactaaactgctgaaggcaggtgccaagccggat
caaatcggcatcattacaccatatgaggggcagcgatcgtacctggtgcagtacatgcag
ttcagtggctctcttcacacaaaactctaccaggaggtagagattgccagtgttgatgcg
ttccaaggccgagagaaagacttcatcatcctttcgtgtgtcagagctaacgagcatcag
ggcattggatttcttaatgacccccgccgattgaatgtggccctcacaagagcaaggtat
ggtgtgattattgtagggaatccaaaggctctgtccaaacagccactgtggaatcatctg
ctgaattattacaaggagcagaaagtgctggtggagggaccactgaacaatctccgcgag
agtctgatgcagttcagcaaaccacggaagctggtgaataccatcaatccgggggcccga
ttcatgactacagctatgtatgatgctcgagaagctatcatcccaggctccgtgtatgac
aggagtggccaggctggacgtccctccaacatgtacttccaaacccacgaccagattgga
atgattggagccagccccagtcacgttgctgcaatgaacatccccattcccttcaatctg
atgatgcccccaatgccacctcctgggtactttggacaagcaaatggaccagcaattggt
cgtggaattcctaaaggaaaagtgggccgtggggctcgtcagcgaaaccgtggcatgggg
aaccagctgaacagtcagtccaacctgcccaacagccaggccagtcaggatgtggtgtcg
cagccattctctcaggggcctctgacgcagggatacatctcgatgagccagccttcacaa
atgagccagcccggcctttctcagccggaactttctcaggatagttacctgggagatgag
ttcaagtctcagatcgatgtcgccttgtcgcaggattccacttaccagggcgaacgtgca
tatcaacatggggtgactgggctgtcacagtactag
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