KEGG   Scyliorhinus canicula (smaller spotted catshark): 119952943
Entry
119952943         CDS       T11175                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018  RNA degradation
scau03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119952943
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119952943
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scau03019]
    119952943
   03041 Spliceosome [BR:scau03041]
    119952943
Messenger RNA biogenesis [BR:scau03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     119952943
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     119952943
Spliceosome [BR:scau03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    119952943
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 119952943
NCBI-ProteinID: XP_038632508
LinkDB
Position
18:111148505..111167140
AA seq 129 aa
MELVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECYIRGSTIKYLRIPD
EIIDMAKEEVVSKGRGRGLQQQKQQQQQKGRGAGGGAGRGVFGGRGRGVAGADRGHEEKL
GKLSGVKKP
NT seq 390 nt   +upstreamnt  +downstreamnt
atggagcttgtggaattgaagaatggagaaacctacaatggtcacctggtcagctgtgac
aactggatgaatattaacctgcgagaggtcatttgtacgtccagggatggggacaagttc
tggaagatgccggaatgttacattcgtggcagcaccattaaatatctgcgcatccctgat
gaaatcattgacatggcgaaagaagaggtggtgtcaaagggcagaggtcgtggcctccag
caacagaagcagcagcaacaacagaaagggcgaggagctggtgggggtgctggcagaggt
gtgtttggtgggcggggccgtggagtggccggagcagaccgaggacacgaggagaagctg
ggaaagttatcgggagtaaagaaaccgtga

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