Scyliorhinus canicula (smaller spotted catshark): 119952956
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Entry
119952956 CDS
T11175
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau02010
ABC transporters
scau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
119952956
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119952956
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scau02000
]
119952956
Transporters [BR:
scau02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
119952956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
119952956
NCBI-ProteinID:
XP_038632525
LinkDB
All DBs
Position
18:95546114..95762486
Genome browser
AA seq
2265 aa
AA seq
DB search
MSFWIHLRLLLWKNFTYRKRRTIQLIIELLWPLFLFFILVSVRQTHLAYQQHECHFPNKA
LPSAGILPWIQGAICNIENPCFPQATPGEMPGVVGNFNQSIVSRLLSDAQKVLLHATQDH
TLHSIHELISALKKFSENSPPLSGLPVREYLQKNQTLSQFLLKNVSLPTQVVNDLMTSKV
NLEQISLAGPRASYKEIVCNISHLSSFLVTKNKRVFNRLHKSLCALPEETLQKATTIFFS
EINLPKLLTERVTFTAGNTLNATNALNNFMHKMGSLVQQISNMTSFSEFRDAVRWLTSSN
TTGSPKMISQMISKIVCGHPDGGGLQIPFLNWYEDDDYKTLFGRNVTDDKMIPFGNLTSP
HCNDLVRSLESYSMIMWKSIKPFFVGKILYTPDTPDTLRIMKEVNRTFEDLSLLQDVQGA
WKEAGPQIEKFMEGSQEIHVLQEMLKNPAIASLVNLQLNSTSWDAASIANFLSNQSQGSD
NSIYTWKQAYSEVNQMVNSLSRVVECISLNKIEAVPTEEKLVARALQLLEERQFWAGVVF
LVEEPLGNESRNLQSHIKYKIRMDIDDVTRTNNIKDRLWDPGPAAYPSVNLRYIWGGFVY
IQDLVEQAIVRVQTGEHKKTGIYLQQMPYPCYVDDAFLRVLNRSLPLFMILSWIYSVAMI
IKGVVHEKEARLKETMKMMGLTNGMLWVSWFISSFIPFLISSALLTLILKKGEILPYTDP
SIVFAFLATFAVATIMQCFLISTFFSGANLAAACGGIIYFSLYLPYVLCVAWRDFVTYPL
QIFASLLSPVAFGFGCEYFALYEEQGVGVQWFNLVSSPVEGDPYNFTTSILLMLLDALLY
SIAAWYIEAVFPGQFGIPKPWYFPVLRSYWCGEFYCNEDLCELSDNSSTNKVHLEKEPTH
FKLGVSIQKLVKVYGKKVAVNGLSLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYILGRNIFTEMDAIRKSLGMCPQHNVLFDILTVEEHIWFYGRLKGLTEEEVNEEIKLMI
DDVDLVHKRREQTKNLSGGMQRKLSVAIAFVGGSKVVILDEPTAGVDPYSRRGIWELLLK
YRKGRTIILSTHYMDEADLLGDRIAIISHGKLCCCGSSLFLKNHLGTGYYLTLVKKENDR
TTPASSSSTTIGVRKDDSDSERSYDTGLGSEQYSETGALDVSAVLTLVQKYVSNARLVED
FGHEMTYILPYVGAKDGAFVELFQELDNRLCELGISSYGISDTSLEEIFLKVAESTGVDS
DVADGNVPIKRVRCSRSSEHTLQPVSEEGDFEMPDPEPVKRSVRTKEPKETDAMHSVEGR
GSYQLQGWQLTRQQFHSLFVKRFLYARRSCRGLFAQIVLPALFVFVALFFSMIVPPFGKY
PPLELNPWIYGEQYTFISDDFPEDPNTRELISALLDDPGFGTRCMADGANEDCLAGDFEW
ITPPVSQSIMDIFRTGSWTVQNPSPACECSSDDIQRMLPKCEEGAGGLPPPELQRNTGDV
LQNLTGRNISDYLVKTYPQIIGKSLKTKKWVNEFRYGGFSLGAQSSQVLPSLNEVNNSII
EISSRMNVTKGSSMDRLLGNIANFIEGLNTKNNVKVWFNNKGWHSMVSFVNVMNNAVLRA
NLPAGKDPRRFGITAFNHPLNLTKEQFSEVALIGTSVDLLVSICVIFAMSFVPASFVLFL
IEERVSKAKHLQFVSGVKPGIYWLANFAWDMCNYAVSATLVVIIFICFQKQSYVSASNLP
ALILLLFLYGWSITPLMYPASFLFSIPSSAYVALTCVNLFIGINGSVATFVLELFNDAKL
NEVNEILKKVFLIFPHFCLGRGMIDMVKNQAKADVFERIGEKKFTSPLSWDLVGKNMFAM
AIQGVIFFLFTILLQYKFFIKIRPLSLKLPPLETEDEDVTRERHKVMYGGGEGDILVIKD
LTKVYRRKKKPAVDRLCVGIPPGECFGLLGINGAGKTSTFKMLTGDTEVSSGEAFLDGYS
ILSNIQDVHQNMGYCPQFDAINKLLTGREHVEFYSRLRGIPEHEVAKVTEWAMKKLGLSR
YADRPSGTYSGGNKRKLSTAIALIGCPPIIFLDEPTTGMDPKARRFLWNCILSVIKEGRS
VVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKSRFGDGYTIILRMDSSTPDWSPIE
EFMVTTFPGCVLKEKHHSMLQYQIPTGCCSLAKIFSALTTNKENLKIEDYSVSQTTLDQV
FVNFAKDQSEDDYLKETFTHGSQYKDTVKRITNFLADDNMRESSV
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atgagcttctggatacacctccggcttctcctctggaagaatttcacatatcggaaaaga
cgaactattcagctgattatcgagctactgtggcctctctttctcttctttatattagtc
tcagtgcgtcagacccatctagcatatcagcagcatgaatgtcattttccaaacaaagcg
ttaccatcagcagggatattgccatggatacagggagccatctgtaatattgaaaatcct
tgctttccacaagctacaccgggagaaatgccaggagttgtggggaatttcaaccaatcc
attgtttctcgcttgctttctgatgctcaaaaggtgctacttcacgcgacccaggatcac
actcttcacagcattcatgaactcatcagtgcattgaaaaagttcagcgaaaacagccct
ccactgtctggtttgccagtcagagaatatctacagaagaatcagacactatcccagttt
ctcctgaaaaatgtatcacttcctacacaggtggtcaatgacttaatgacatcaaaagta
aatctcgagcagatatcccttgctggtccaagggcgagttataaagagattgtttgcaac
atatcccatctctccagcttcttggttacaaagaacaagagggtattcaaccgtttacac
aagagtctgtgtgccttaccagaggagacactgcaaaaagcgacaactattttcttttct
gagatcaatttacccaaactcttgacggagcgggttacatttactgcggggaacacactt
aatgcaactaatgccctgaacaattttatgcataaaatgggatcacttgtgcagcagatt
tccaacatgaccagtttttctgaattccgtgatgcagttcggtggttaactagttccaac
accactgggtcacccaagatgatatctcaaatgatatcaaaaatagtctgtgggcatcca
gatggaggtggcctgcagatacctttcttgaactggtatgaagatgatgactacaagacc
ttatttggcaggaatgtcacggatgataaaatgataccttttggcaatttaacatcacct
cactgtaatgatctagtccggtctcttgaatcttactctatgattatgtggaaaagtatc
aagccattttttgtgggaaagattctgtacactccggatactccagacacactgaggata
atgaaagaggtcaacagaacatttgaggatctcagtttgttgcaggatgtacaaggagca
tggaaagaagctggaccccagatcgagaaatttatggaaggtagccaggaaatccatgtc
ttgcaggaaatgctgaagaaccctgctatcgccagccttgttaacctacaacttaattct
acctcctgggatgcagcaagcattgcgaacttcctgtcgaaccaaagtcaggggagtgac
aattccatttacacctggaaacaagcttacagcgaagtcaatcagatggtcaactctttg
tcccgtgttgtcgagtgcatatctctgaataaaatcgaagccgttccgactgaagaaaag
ttagtggcgcgggcattgcagcttctggaggagagacagttctgggccggtgttgtgttt
ttggttgaggagccattgggcaatgagtcacgcaaccttcagagccacatcaagtacaag
atcaggatggacattgacgatgtcactcggaccaataatatcaaggacaggctttgggac
ccgggacctgcagcatacccatctgtgaacctgcgttacatctggggaggatttgtttac
atccaggatttggtagaacaggcaattgttcgagtacagactggtgaacacaagaagact
gggatttatttacaacagatgccatacccatgttacgtagatgatgcattcttgcgggtt
ttgaaccgttcgttgcccctcttcatgatcctgtcctggatttactcagtagcaatgata
atcaagggggtggttcacgagaaggaggcacggctgaaggagacgatgaagatgatgggc
ctaactaatggaatgttgtgggtcagctggttcatcagtagcttcatccctttcctcatc
agttctgctttactcactttaatcctgaagaaaggagagattctcccatacaccgacccc
tccattgtgttcgcgttcctcgcaacctttgctgttgctaccatcatgcagtgcttcctg
atcagcaccttcttctcgggtgcaaacttagcagctgcttgtgggggaatcatctacttc
tccctctacctcccctatgtcctgtgcgtggcatggagagattttgtcacttacccactc
caaatatttgcgagtctgttatctcctgttgcatttggttttggatgtgaatattttgct
ctctatgaagaacaaggagttggtgttcagtggtttaaccttgtctccagccctgtagaa
ggtgacccatacaattttactacttctatcctcctcatgctgttggacgctctcctctat
agcattgccgcatggtacattgaagcagtgtttccaggccaatttggaattcccaaaccc
tggtattttcctgtcctcaggagttactggtgtggagagttctactgtaatgaggatctg
tgtgaactctccgataacagtagcaccaacaaagttcatctggagaaggaaccaactcac
ttcaagttgggtgtgtccatccagaaactagtgaaggtttacggaaagaaagtggctgtt
aatggacttagcctcaatttctatgaggggcagatcacctcattcttggggcacaatgga
gctggaaaaacaactaccatgtctatcctgactggattgttcccacccacctctgggaca
gcctatattctgggcagaaatatcttcactgagatggatgcaatcagaaagtcactgggg
atgtgtccacagcacaacgtactttttgacatactgactgtagaggagcacatctggttt
tatggaaggctgaaagggctgactgaggaggaggtaaatgaagaaattaagctgatgatt
gacgacgtggatctggtgcacaaacgtcgggagcaaacaaaaaatctctcgggtggcatg
caacgaaagctttccgtcgccatcgcatttgttggtgggtcaaaggttgttattttagat
gaaccaactgctggcgttgatccttactcccgccgaggcatatgggagctcctgcttaaa
tacaggaaaggccgtaccataatattgtcgacccattacatggatgaggcggacctcctt
ggggacagaattgccatcatctcccatggaaaactctgctgctgtggctcttctctgttc
ctcaaaaaccatttgggtactgggtattacctgaccttagttaaaaaagagaacgacaga
acaacgccagccagctccagcagcaccaccattggcgtgcggaaggatgacagtgattct
gagaggagctatgacactggccttggcagtgagcagtacagtgaaactggtgctttggat
gtatcggccgtcttaacactggttcagaaatatgtctccaatgcacgtctggtagaagat
tttgggcacgaaatgacttatattttaccctatgttggagcaaaagatggtgcttttgtg
gaactcttccaggaattggacaaccgtctctgtgaactcggaatttccagttatgggatc
tcagacaccagcctcgaagagatttttctcaaagtggctgaaagcacaggagtggacagt
gatgttgcagatggaaatgtccccattaaaagagtcagatgttcaaggtccagtgagcac
acactgcagccggtcagtgaggaaggagatttcgagatgcctgacccagaacccgtaaaa
aggagtgtccgaacaaaagaacccaaggagacggatgccatgcacagtgtggagggcaga
ggttcataccagttacaaggttggcagctcaccagacagcagttccattccttgttcgtc
aagcgctttctctatgctcgccgaagctgcaggggactttttgctcagattgtgcttcct
gcattgtttgtgtttgtcgctctgttcttcagtatgattgtgcctccattcgggaaatat
ccaccattggaactgaatccctggatatatggagaacagtacaccttcatcagtgatgat
tttccagaggatcccaacacccgtgagctgatcagtgcactcctcgacgatcctggattt
ggcacccggtgtatggcagatggagcgaatgaagactgcctcgcgggtgattttgaatgg
ataactcccccagtttcacaatcaatcatggacatctttcgcactggtagctggactgta
caaaatccttcccctgcatgtgagtgcagctcggacgatatccagaggatgctgcctaaa
tgtgaagaaggagcaggaggcctcccgcctcctgagttgcagcgaaatacaggagacgtt
cttcagaacctaactggcagaaatatctctgactaccttgtgaagacctacccccagatc
atcggtaaaagtctgaaaactaagaagtgggtgaatgaattcaggtatggaggattctca
ttgggagcacagagttcccaggtgttgccttccctgaatgaagttaataattccatcatt
gagatcagctcacgaatgaatgtcacaaagggcagttccatggaccgactgctaggaaac
atcgcaaactttattgaggggctgaacacaaaaaacaatgtaaaagtctggttcaacaac
aaaggctggcattccatggtgagtttcgtgaatgttatgaacaatgcagtgctgagagca
aatcttccagctggaaaagatcccagaaggtttgggattacagccttcaaccacccactc
aacctgaccaaagaacagttctctgaggtcgcactgataggaacctctgttgatttgctt
gtctccatttgtgtcatctttgccatgtcctttgtgccagccagctttgttctcttcctc
atcgaagagcgtgtcagcaaagccaagcacctgcagtttgttagtggcgtgaagcctggc
atttattggctcgctaattttgcatgggatatgtgtaattacgcagtgtcagctacactg
gtggttatcatcttcatctgttttcaaaaacaatcgtatgtatctgcctccaatttgcca
gcactgatcctcctactgttcctctacgggtggtccatcactcccctcatgtacccagca
tcctttctgttcagtattcccagttctgcctacgtggctctgacttgtgttaacctgttc
attggtatcaacggaagtgtggccacctttgtcctggagctcttcaacgacgccaaactg
aatgaggtcaatgaaattctgaagaaagtgttcctcattttcccacatttctgccttggc
cgaggaatgatcgacatggtgaagaatcaagctaaggcagatgtttttgagaggattggg
gaaaagaagttcacgtctccgctttcctgggacttggtggggaagaacatgtttgccatg
gccatccagggagtcatcttctttctgttcaccattctgctgcagtacaagttcttcata
aaaataaggcctttatctttaaaacttccaccattggaaacagaagatgaggatgtaacc
agagagagacataaggtcatgtatggtggaggcgaaggtgacattctagtcatcaaggat
ctcaccaaggtttacagaagaaagaagaaaccagctgtggaccgattgtgtgtgggaatt
cccccaggggagtgttttgggcttctgggcatcaacggagctgggaaaacgtccaccttt
aagatgctcacgggtgacactgaggtcagcagcggcgaggccttcctcgatggatatagc
atactgtctaacatccaggacgtgcaccagaacatgggatactgcccacagtttgatgcc
atcaacaagttgttgacagggagggaacatgtagagttctactcacggctgcgtggcatt
cctgaacatgaggttgctaaagtcactgaatgggccatgaagaagctcggactgtcacgc
tacgcagacagaccttctgggacatacagcggtggcaacaagcggaaattgtcgactgcc
atcgcactgattggatgcccaccaatcattttcctggatgaacctacaacaggaatggac
cccaaggccaggaggttcctctggaattgcatcctgagtgtgatcaaagaagggcgatcg
gtggtactcacctcgcacagcatggaggaatgtgaggcgctgtgcacgaggatggctatc
atggtgaatgggcgattccgctgcctgggcagtgtgcagcacctgaaaagcaggtttgga
gacggttacaccatcatcctgcggatggatagttctacgcctgactggtctcctatcgaa
gagttcatggtgaccacgttcccaggctgtgtattgaaagaaaagcaccacagcatgctg
caataccagataccaactggctgctgttccctggccaaaatcttcagtgccctcacgact
aataaagaaaatctgaagatcgaggactattcagtgtctcaaaccacgttagatcaagta
tttgtcaattttgccaaggatcaaagtgaagatgactatttgaaggaaactttcacacat
ggatcgcaatataaggacaccgtaaagcgcatcacaaactttttagcagatgacaacatg
agggagagttcagtatga
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integrated database retrieval system
