Scyliorhinus canicula (smaller spotted catshark): 119953390
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Entry
119953390 CDS
T11175
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119953390 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
119953390 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119953390 (lsm7)
03041 Spliceosome [BR:
scau03041
]
119953390 (lsm7)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119953390 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
119953390 (lsm7)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119953390 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
119953390
NCBI-ProteinID:
XP_038633541
LinkDB
All DBs
Position
18:complement(99258422..99263820)
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AA seq
106 aa
AA seq
DB search
MAASGDKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYVRD
PDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
321 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtctggggataaagagaagaaaaagaaggagagcattctcgacctctccaag
tacatagacaaaacaatccgtgtaaagtttcaaggtggacgagaagctagtgggattttg
aaaggatttgacccacttctcaatcttgtattggatggaacaatagagtatgtgagagat
ccggacgaccaatacaaattgacagaagacacaaggcagcttggcttggttgtatgcaga
gggacctcggttgttctgatttgcccacaggatgggatggaagccattccaaatcctttc
atccaacagcaagatggttaa
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integrated database retrieval system
