Scyliorhinus canicula (smaller spotted catshark): 119953950
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Entry
119953950 CDS
T11175
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119953950 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119953950 (dhx8)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119953950 (dhx8)
Spliceosome [BR:
scau03041
]
Complex C
Other components
Step II factors
119953950 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
ABC_tran
T2SSE
nSTAND_NTPase5
PhoH
Transformer
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119953950
NCBI-ProteinID:
XP_038634593
LinkDB
All DBs
Position
19:20213571..20266100
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AA seq
1120 aa
AA seq
DB search
MRPPAKPSTSCKVEIVKPRSEKEKMKELFPVLCLPDNPSSRTLLDEDDIKVAADALKELE
ALMPSKNDIKKSSKRSSHEKGKRKKRSRSRSRDRDRKRHRRSRSRSHSRDRNKSKSNKWS
RSRSRSPNPNLSRDHKDRGNVNEKSCEKRKDRHIDRPPPEEPSVGEIYNGKVTSIMQFGC
FVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQ
ETGEDLNPNRRRNVGGENNEETTMRNPDRPSNLSLVNTPEVEDDVLERKRLTKISDPEKW
EIKQMIAANVISKEEYPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMS
PVKIVKNPDGSLSQAAMMQSALAKERREMKQAQREAEMDSIPMGLNKHWVDPLPDVDGRQ
IAANMRGIGMMPQDIPEWKKHAFGGNKASYGRKTQMSILEQRESLPIYRLKEQLVQAVHD
NQVLIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQ
EVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLSPYAIIMLDEAHERTIHTDVLFGL
LKKTVKKRPDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDAS
LITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSMGPDVPELIILPVYSALPSEM
QTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPIS
QAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDL
LSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLG
CSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQAEGDHLTLLAVYNSWKNNKFSNP
WCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDP
QEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAF
FKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctccagccaagccatcgacctcttgcaaggtggaaatagtcaaaccaagatcg
gaaaaggagaaaatgaaggagctgttccctgtactgtgtctacctgataatccatcttca
aggacactgctggatgaagatgacataaaagtagccgcagatgcattgaaggagcttgag
gccttgatgccatcaaagaatgatattaagaagagtagcaagcgcagctctcatgaaaag
ggaaagcgaaagaaaaggagtcggagtcgcagccgagaccgagacaggaagcggcatcgc
cgatcgcggtccaggtcacactccagagatcgaaacaaaagtaaatccaacaagtggtcc
agaagcaggagccggagcccgaacccgaacctgagcagggaccataaagatcgaggcaat
gtcaatgaaaagagttgtgagaagaggaaagacaggcacatagacaggcctccaccagag
gaaccatcagtgggcgagatctacaatggcaaggtcaccagtatcatgcagtttgggtgc
tttgtccagctggaaggtctgagaaaacgatgggagggcttggtacacatctccgagctc
aggcgagaagggcgtgtggccaatgttgctgacgttgttagcaaaggtcaaagagttaag
atcaaagtgttatcattcactgggtctaaaaccagcttaagcatgaaggatgtagatcaa
gagactggagaggatctaaatccaaaccggcgtcgaaatgttggcggagaaaacaatgag
gaaacaaccatgaggaaccctgacagacccagtaatctctcattggtcaacacccccgag
gttgaggacgatgtactagaacgcaaacggctcacaaaaatctccgatcccgagaagtgg
gagatcaaacagatgattgcagcaaatgttatctcaaaagaagagtatcctgactttgat
gaagaaacaggcatccttcctaaagttgatgatgaagaagatgaggaccttgagatagag
ctagtggaagaagagcctccattcctcaggggacacaccaagcaaagcatggacatgagc
cctgttaaaatagtaaagaatcccgatggctcgctatcccaggctgccatgatgcaaagc
gctctggccaaagagagacgagagatgaaacaagcgcagcgggaggcagaaatggactcg
atcccaatgggactcaataaacactgggttgatccactacctgatgttgatggccgacag
attgcagcaaatatgagaggcataggaatgatgccccaagacatacccgagtggaagaag
catgcctttggaggaaacaaggcatcctatggtcgtaaaacccaaatgtctattcttgag
cagagagagagcctacctatttacagacttaaagaacagctggttcaggccgtgcatgac
aaccaggttctgattgtcattggggaaactggttctggtaaaactactcagatcacccag
tacttggcagaggcagggtacacaacccgggggaaaatcgggtgcacgcagccaaggcgt
gtggctgcgatgtcagttgctaagagagtgtcagaagagtatggttgttgcttgggtcaa
gaggttggctacaccattcgatttgaggactgcaccagtccagagactgtgataaagtat
atgactgatggtatgttgctgagagagtgcctaatagatcctgacctgtctccgtatgct
atcatcatgttggatgaggcccatgagaggactatccacactgatgttctgtttgggctt
ctgaaaaagactgttaaaaaacgtcctgatatgaaattgattgtaacatcagccacattg
gatgcagttaagttctcccagtatttctacgaggcacctatcttcacaatccccggccga
acataccccgtggaagtactttatactaaggaacctgagaccgattatctagacgctagt
ctaattacagtgatgcagatccatttaacggaaccaccaggtgacatcctggttttccta
actggtcaggaagaaattgacactgcgtgtgagattttgtatgagcgaatgaagtccatg
ggtcccgatgtgccagagttgatcattctgcctgtctattctgctttgccaagtgagatg
cagaccagaatttttgatcccgctcctcctggcagcagaaaggttgtaattgccaccaac
attgctgaaacatcactgactattgacggtatctactatgttgtggatcctgggtttgtt
aaacagaaagtctacaactcaaagactggcattgaccagttagtggtgactccaatttca
caggctcaagctaaacagcgtgctggccgtgcagggaggacaggaccagggaagtgctat
cgcctgtacaccgagcgtgcctatagggatgaaatgttgaccacaaatgttcctgaaatt
caaagaactaatcttgctagtacagtactgtcactcaaggctatggggatcaatgacctg
ctttcatttgattttatggatgccccacctatggagacccttatcactgccatggaacaa
ctgtacacattaggagcactggatgatgaaggtttactgacgagactcgggcgcaggatg
gccgagtttcctctggagcccatgctatgtaaaatgttgatcatgtctgtacacctaggc
tgcagtgaagagatgttgacaattgtgtccatgctgtccgtacagaatgttttctaccgc
ccaaaggataagcaagctcttgcagaccagaagaaggccaagttccaccaagcagaagga
gatcacctcaccttgcttgctgtctacaattcatggaaaaataataagttctccaatcca
tggtgctatgaaaacttcatccaagcacgttcccttcgcagagctcaggatatccgcaag
cagatgctgggtatcatggacaggcataaactggatgttgtttcatgtggaaaagccacg
gtgcgagttcagaaagcaatctgcagtggcttcttccgcaatgcagctaagaaggaccca
caagagggataccgtacactgattgaccagcaggtggtgtacattcacccttccagtgct
ctcttcaacaggcagcctgaatgggttgtatatcatgaacttgtcttaacgactaaggaa
tacatgcgggaagtgactaccatcgatccacgctggttggtggagtttgcacctgccttc
ttcaaagtgtccgacccaactaaactcagcaagcaaaagaaacaacagaggctggagccc
ctctacaatcgctatgaagagcccaatgcctggaggatctcccgtgctttcagacgacgt
tag
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integrated database retrieval system
